miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 31060 0.66 0.435404
Target:  5'- aCCGAggUGCCG-GG-CGAGCAGguCGCCa- -3'
miRNA:   3'- -GGCU--GCGGCuCCaGCUCGUC--GUGGag -5'
26473 3' -59.2 NC_005357.1 + 30494 0.66 0.444984
Target:  5'- gCUGAaaguCGUCGAGGUUGAGCAcgagguggcGCAgCUUCu -3'
miRNA:   3'- -GGCU----GCGGCUCCAGCUCGU---------CGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 30425 0.67 0.389363
Target:  5'- aUGGCGauGAGcG-CGGGCAGgGCCUCg -3'
miRNA:   3'- gGCUGCggCUC-CaGCUCGUCgUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 30279 0.68 0.354903
Target:  5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3'
miRNA:   3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 29896 1.12 0.000205
Target:  5'- aCCGACGCCGAGGUCGAGCAGCACCUCg -3'
miRNA:   3'- -GGCUGCGGCUCCAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 29790 0.66 0.435404
Target:  5'- cCCGACGCCaaAGGaCG-GCAGCAgCg- -3'
miRNA:   3'- -GGCUGCGGc-UCCaGCuCGUCGUgGag -5'
26473 3' -59.2 NC_005357.1 + 29087 0.67 0.389363
Target:  5'- uCgGGCGCCGAGGUCaggcccguGCGGgACUUg -3'
miRNA:   3'- -GgCUGCGGCUCCAGcu------CGUCgUGGAg -5'
26473 3' -59.2 NC_005357.1 + 28472 0.68 0.322649
Target:  5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3'
miRNA:   3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5'
26473 3' -59.2 NC_005357.1 + 28397 0.67 0.371861
Target:  5'- uUCGACGCCGg---CGGcGCGGCGCCa- -3'
miRNA:   3'- -GGCUGCGGCuccaGCU-CGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 28127 0.67 0.380545
Target:  5'- gCGguACGCCu-GGUCGGGCGGCAgCa- -3'
miRNA:   3'- gGC--UGCGGcuCCAGCUCGUCGUgGag -5'
26473 3' -59.2 NC_005357.1 + 27298 0.66 0.464491
Target:  5'- uCCGcCGCCagcauGGGGUCGGGCcugguaGGCAgCUa -3'
miRNA:   3'- -GGCuGCGG-----CUCCAGCUCG------UCGUgGAg -5'
26473 3' -59.2 NC_005357.1 + 25719 0.68 0.32032
Target:  5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3'
miRNA:   3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5'
26473 3' -59.2 NC_005357.1 + 25619 0.72 0.184195
Target:  5'- aCGGCGgCGcGGUCGccAGCAGCGCgUCc -3'
miRNA:   3'- gGCUGCgGCuCCAGC--UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 25516 0.67 0.41383
Target:  5'- cCCG-CGauGAGGUCGguuuugccgccgccGGCAGCGCCc- -3'
miRNA:   3'- -GGCuGCggCUCCAGC--------------UCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 25287 0.66 0.464491
Target:  5'- gUCGaAUGCCuuGAGGUCGuGCGGCcgGCCc- -3'
miRNA:   3'- -GGC-UGCGG--CUCCAGCuCGUCG--UGGag -5'
26473 3' -59.2 NC_005357.1 + 25099 0.66 0.464491
Target:  5'- cCCGGCGCCGuGGgauacAGCgGGUGCUUCu -3'
miRNA:   3'- -GGCUGCGGCuCCagc--UCG-UCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 24596 0.7 0.258241
Target:  5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3'
miRNA:   3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 23707 0.72 0.189152
Target:  5'- gCCGguaGCGCCcAGGUCGcgGGcCAGUGCCUCg -3'
miRNA:   3'- -GGC---UGCGGcUCCAGC--UC-GUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 23250 0.68 0.338497
Target:  5'- aUCGACGCCGGcGGcaCGGGCAGCGa--- -3'
miRNA:   3'- -GGCUGCGGCU-CCa-GCUCGUCGUggag -5'
26473 3' -59.2 NC_005357.1 + 22898 0.7 0.258241
Target:  5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3'
miRNA:   3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.