Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26473 | 3' | -59.2 | NC_005357.1 | + | 399 | 0.71 | 0.233164 |
Target: 5'- gCCaGCGCgCGAcuGUUGAGCAGCACgUCg -3' miRNA: 3'- -GGcUGCG-GCUc-CAGCUCGUCGUGgAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 18369 | 0.7 | 0.251772 |
Target: 5'- gCCGGCGgCGAGGUUG-GCcuugccgauGGCGCCg- -3' miRNA: 3'- -GGCUGCgGCUCCAGCuCG---------UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 9900 | 0.7 | 0.251772 |
Target: 5'- gCGugG-CGAuGUCGAGCuGCACUUCg -3' miRNA: 3'- gGCugCgGCUcCAGCUCGuCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 4157 | 0.7 | 0.258241 |
Target: 5'- gCCGcccaccuugcGCGCCGuGGUCGAGguGUAgCCa- -3' miRNA: 3'- -GGC----------UGCGGCuCCAGCUCguCGU-GGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 24596 | 0.7 | 0.258241 |
Target: 5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3' miRNA: 3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 22898 | 0.7 | 0.258241 |
Target: 5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3' miRNA: 3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34882 | 0.7 | 0.271586 |
Target: 5'- gUGGCGCCGcGGaUCGAGCA-CGCCg- -3' miRNA: 3'- gGCUGCGGCuCC-AGCUCGUcGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 11338 | 0.69 | 0.28548 |
Target: 5'- gCCGGCcugcaCCGAGGUgaGcAGCGGCACCa- -3' miRNA: 3'- -GGCUGc----GGCUCCAg-C-UCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14351 | 0.69 | 0.288325 |
Target: 5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3' miRNA: 3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32627 | 0.69 | 0.292634 |
Target: 5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3' miRNA: 3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 21667 | 0.69 | 0.307362 |
Target: 5'- gCGAUgaGUCGAGcG-CGGcGCAGCGCCUCu -3' miRNA: 3'- gGCUG--CGGCUC-CaGCU-CGUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14931 | 0.69 | 0.307362 |
Target: 5'- gCUGGCgGCCGAGGcCGc-CGGCAuCCUCg -3' miRNA: 3'- -GGCUG-CGGCUCCaGCucGUCGU-GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 35193 | 0.69 | 0.314935 |
Target: 5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3' miRNA: 3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 35155 | 0.69 | 0.314935 |
Target: 5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3' miRNA: 3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 7608 | 0.69 | 0.314935 |
Target: 5'- -gGACaGCaCGuGGUCGcGCAGCGCCg- -3' miRNA: 3'- ggCUG-CG-GCuCCAGCuCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25719 | 0.68 | 0.32032 |
Target: 5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3' miRNA: 3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 28472 | 0.68 | 0.322649 |
Target: 5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3' miRNA: 3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 23250 | 0.68 | 0.338497 |
Target: 5'- aUCGACGCCGGcGGcaCGGGCAGCGa--- -3' miRNA: 3'- -GGCUGCGGCU-CCa-GCUCGUCGUggag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14408 | 0.68 | 0.338497 |
Target: 5'- gCGACGCCGAcauGaUCGGcuucuucCAGCGCCUCa -3' miRNA: 3'- gGCUGCGGCU---CcAGCUc------GUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32344 | 0.68 | 0.34663 |
Target: 5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3' miRNA: 3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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