miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 29896 1.12 0.000205
Target:  5'- aCCGACGCCGAGGUCGAGCAGCACCUCg -3'
miRNA:   3'- -GGCUGCGGCUCCAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 37822 0.82 0.034085
Target:  5'- gCCGAcaucauCGCCGAGGcCGAGCAGUuCCUCg -3'
miRNA:   3'- -GGCU------GCGGCUCCaGCUCGUCGuGGAG- -5'
26473 3' -59.2 NC_005357.1 + 35077 0.81 0.039394
Target:  5'- aCGACGCCGAGGUCGAGgCcGCGCUc- -3'
miRNA:   3'- gGCUGCGGCUCCAGCUC-GuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 15974 0.8 0.054079
Target:  5'- aCgGAUGCCGAGGUCGAGC-GCAUC-Cg -3'
miRNA:   3'- -GgCUGCGGCUCCAGCUCGuCGUGGaG- -5'
26473 3' -59.2 NC_005357.1 + 2207 0.78 0.066064
Target:  5'- gCCGACGCCcucGUCGGGUAGCACCa- -3'
miRNA:   3'- -GGCUGCGGcucCAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 22296 0.77 0.0829
Target:  5'- aCGGCGUCGAaGUCGGGCAGCACg-- -3'
miRNA:   3'- gGCUGCGGCUcCAGCUCGUCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 39327 0.77 0.090215
Target:  5'- aUGACGCCGcaucAGGUCGAGaCAGCACaagugCUCa -3'
miRNA:   3'- gGCUGCGGC----UCCAGCUC-GUCGUG-----GAG- -5'
26473 3' -59.2 NC_005357.1 + 10311 0.76 0.103783
Target:  5'- -gGGCGUCGAGGUCG-GCAGCgGCCa- -3'
miRNA:   3'- ggCUGCGGCUCCAGCuCGUCG-UGGag -5'
26473 3' -59.2 NC_005357.1 + 33870 0.75 0.112824
Target:  5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3'
miRNA:   3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5'
26473 3' -59.2 NC_005357.1 + 10492 0.75 0.115997
Target:  5'- uUCGGaGUCGugcGuGUCGAGCAGCGCCUCg -3'
miRNA:   3'- -GGCUgCGGCu--C-CAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 13886 0.74 0.129543
Target:  5'- gCCGGCgGCCGcaAGGUCGugccguucaacaAGCAGCGCCg- -3'
miRNA:   3'- -GGCUG-CGGC--UCCAGC------------UCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 10280 0.73 0.148525
Target:  5'- -gGAUGCCcuguAGGUCGucCAGCACCUCg -3'
miRNA:   3'- ggCUGCGGc---UCCAGCucGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 34794 0.73 0.1655
Target:  5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3'
miRNA:   3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 33749 0.73 0.170007
Target:  5'- aCCaACGCCGAGGUgCGcGCGGCACg-- -3'
miRNA:   3'- -GGcUGCGGCUCCA-GCuCGUCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 25619 0.72 0.184195
Target:  5'- aCGGCGgCGcGGUCGccAGCAGCGCgUCc -3'
miRNA:   3'- gGCUGCgGCuCCAGC--UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 23707 0.72 0.189152
Target:  5'- gCCGguaGCGCCcAGGUCGcgGGcCAGUGCCUCg -3'
miRNA:   3'- -GGC---UGCGGcUCCAGC--UC-GUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 4830 0.72 0.199419
Target:  5'- gCCGGCGCCGucGUCGAauucacggaaaGCGGCcaGCUUCc -3'
miRNA:   3'- -GGCUGCGGCucCAGCU-----------CGUCG--UGGAG- -5'
26473 3' -59.2 NC_005357.1 + 17988 0.72 0.199419
Target:  5'- aUGuCGCCGAGGccgCGcGCGGCACCg- -3'
miRNA:   3'- gGCuGCGGCUCCa--GCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 31628 0.71 0.204732
Target:  5'- gCCG-CGCCGAGG-CGcAGCAGUACaugCa -3'
miRNA:   3'- -GGCuGCGGCUCCaGC-UCGUCGUGga-G- -5'
26473 3' -59.2 NC_005357.1 + 37856 0.71 0.210168
Target:  5'- cCUGGCGCac----CGAGCAGCGCCUCg -3'
miRNA:   3'- -GGCUGCGgcuccaGCUCGUCGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.