miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 399 0.71 0.233164
Target:  5'- gCCaGCGCgCGAcuGUUGAGCAGCACgUCg -3'
miRNA:   3'- -GGcUGCG-GCUc-CAGCUCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 597 0.68 0.363313
Target:  5'- uUGAUgGCCGccugcGGGUCGgccAGCAGCGCCg- -3'
miRNA:   3'- gGCUG-CGGC-----UCCAGC---UCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 636 0.67 0.380545
Target:  5'- aCGGCGuCCGGcGUCGAGuCGGUGCC-Ca -3'
miRNA:   3'- gGCUGC-GGCUcCAGCUC-GUCGUGGaG- -5'
26473 3' -59.2 NC_005357.1 + 2052 0.67 0.371861
Target:  5'- aCGGCGCgcaauuccuCGGGGUCGucgccCAGCACCa- -3'
miRNA:   3'- gGCUGCG---------GCUCCAGCuc---GUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 2207 0.78 0.066064
Target:  5'- gCCGACGCCcucGUCGGGUAGCACCa- -3'
miRNA:   3'- -GGCUGCGGcucCAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 2647 0.67 0.371861
Target:  5'- uCCGGCGCuugccgugCGAGGUCuuGCGGUACgcaUCg -3'
miRNA:   3'- -GGCUGCG--------GCUCCAGcuCGUCGUGg--AG- -5'
26473 3' -59.2 NC_005357.1 + 4157 0.7 0.258241
Target:  5'- gCCGcccaccuugcGCGCCGuGGUCGAGguGUAgCCa- -3'
miRNA:   3'- -GGC----------UGCGGCuCCAGCUCguCGU-GGag -5'
26473 3' -59.2 NC_005357.1 + 4563 0.66 0.454681
Target:  5'- gCCGAaguCGCCGAGG-CGcugcucGguGCGCCa- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCu-----CguCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 4671 0.67 0.416607
Target:  5'- gUCGAUGCCGuAGGUagccgccccggUGAGaaaGGCACCg- -3'
miRNA:   3'- -GGCUGCGGC-UCCA-----------GCUCg--UCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 4830 0.72 0.199419
Target:  5'- gCCGGCGCCGucGUCGAauucacggaaaGCGGCcaGCUUCc -3'
miRNA:   3'- -GGCUGCGGCucCAGCU-----------CGUCG--UGGAG- -5'
26473 3' -59.2 NC_005357.1 + 6371 0.67 0.389363
Target:  5'- -gGGCGCUGgguuacaccAGGUCGGccgccGCGGCGcCCUCg -3'
miRNA:   3'- ggCUGCGGC---------UCCAGCU-----CGUCGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 7608 0.69 0.314935
Target:  5'- -gGACaGCaCGuGGUCGcGCAGCGCCg- -3'
miRNA:   3'- ggCUG-CG-GCuCCAGCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 8555 0.67 0.389363
Target:  5'- gCCG-CGCCGAuGG-CGGGCAGCGa--- -3'
miRNA:   3'- -GGCuGCGGCU-CCaGCUCGUCGUggag -5'
26473 3' -59.2 NC_005357.1 + 8786 0.68 0.354903
Target:  5'- gCGGCGCaCGAugGGUCG-GCcGCGCCg- -3'
miRNA:   3'- gGCUGCG-GCU--CCAGCuCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 9900 0.7 0.251772
Target:  5'- gCGugG-CGAuGUCGAGCuGCACUUCg -3'
miRNA:   3'- gGCugCgGCUcCAGCUCGuCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 10069 0.66 0.435404
Target:  5'- uCCGAggcguCGUCGGGG-CGAGCcguGCcauCCUCg -3'
miRNA:   3'- -GGCU-----GCGGCUCCaGCUCGu--CGu--GGAG- -5'
26473 3' -59.2 NC_005357.1 + 10280 0.73 0.148525
Target:  5'- -gGAUGCCcuguAGGUCGucCAGCACCUCg -3'
miRNA:   3'- ggCUGCGGc---UCCAGCucGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 10311 0.76 0.103783
Target:  5'- -gGGCGUCGAGGUCG-GCAGCgGCCa- -3'
miRNA:   3'- ggCUGCGGCUCCAGCuCGUCG-UGGag -5'
26473 3' -59.2 NC_005357.1 + 10492 0.75 0.115997
Target:  5'- uUCGGaGUCGugcGuGUCGAGCAGCGCCUCg -3'
miRNA:   3'- -GGCUgCGGCu--C-CAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 11338 0.69 0.28548
Target:  5'- gCCGGCcugcaCCGAGGUgaGcAGCGGCACCa- -3'
miRNA:   3'- -GGCUGc----GGCUCCAg-C-UCGUCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.