miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 8786 0.68 0.354903
Target:  5'- gCGGCGCaCGAugGGUCG-GCcGCGCCg- -3'
miRNA:   3'- gGCUGCG-GCU--CCAGCuCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 4157 0.7 0.258241
Target:  5'- gCCGcccaccuugcGCGCCGuGGUCGAGguGUAgCCa- -3'
miRNA:   3'- -GGC----------UGCGGCuCCAGCUCguCGU-GGag -5'
26473 3' -59.2 NC_005357.1 + 34882 0.7 0.271586
Target:  5'- gUGGCGCCGcGGaUCGAGCA-CGCCg- -3'
miRNA:   3'- gGCUGCGGCuCC-AGCUCGUcGUGGag -5'
26473 3' -59.2 NC_005357.1 + 32627 0.69 0.292634
Target:  5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3'
miRNA:   3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 25719 0.68 0.32032
Target:  5'- cCCG-CGgCGGGGUCGucguccucaccggcGGCAGCACgCUg -3'
miRNA:   3'- -GGCuGCgGCUCCAGC--------------UCGUCGUG-GAg -5'
26473 3' -59.2 NC_005357.1 + 28472 0.68 0.322649
Target:  5'- gCCGuCGCCGuaguGGUCGAGCAuC-CgCUCg -3'
miRNA:   3'- -GGCuGCGGCu---CCAGCUCGUcGuG-GAG- -5'
26473 3' -59.2 NC_005357.1 + 32344 0.68 0.34663
Target:  5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3'
miRNA:   3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5'
26473 3' -59.2 NC_005357.1 + 13119 0.68 0.354903
Target:  5'- uCCGGguUGCCGgccaggcguGGGUCGuucuGCAacuGCGCCUCg -3'
miRNA:   3'- -GGCU--GCGGC---------UCCAGCu---CGU---CGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 30279 0.68 0.354903
Target:  5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3'
miRNA:   3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 22898 0.7 0.258241
Target:  5'- aCGACuGCUGcGaGUCGAGCAGUugCUg -3'
miRNA:   3'- gGCUG-CGGCuC-CAGCUCGUCGugGAg -5'
26473 3' -59.2 NC_005357.1 + 24596 0.7 0.258241
Target:  5'- uCCGGCguguccuuGCCGGGGUaggucAGCGGCACgUCg -3'
miRNA:   3'- -GGCUG--------CGGCUCCAgc---UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 9900 0.7 0.251772
Target:  5'- gCGugG-CGAuGUCGAGCuGCACUUCg -3'
miRNA:   3'- gGCugCgGCUcCAGCUCGuCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 35077 0.81 0.039394
Target:  5'- aCGACGCCGAGGUCGAGgCcGCGCUc- -3'
miRNA:   3'- gGCUGCGGCUCCAGCUC-GuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 2207 0.78 0.066064
Target:  5'- gCCGACGCCcucGUCGGGUAGCACCa- -3'
miRNA:   3'- -GGCUGCGGcucCAGCUCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 22296 0.77 0.0829
Target:  5'- aCGGCGUCGAaGUCGGGCAGCACg-- -3'
miRNA:   3'- gGCUGCGGCUcCAGCUCGUCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 10280 0.73 0.148525
Target:  5'- -gGAUGCCcuguAGGUCGucCAGCACCUCg -3'
miRNA:   3'- ggCUGCGGc---UCCAGCucGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 25619 0.72 0.184195
Target:  5'- aCGGCGgCGcGGUCGccAGCAGCGCgUCc -3'
miRNA:   3'- gGCUGCgGCuCCAGC--UCGUCGUGgAG- -5'
26473 3' -59.2 NC_005357.1 + 23707 0.72 0.189152
Target:  5'- gCCGguaGCGCCcAGGUCGcgGGcCAGUGCCUCg -3'
miRNA:   3'- -GGC---UGCGGcUCCAGC--UC-GUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 37856 0.71 0.210168
Target:  5'- cCUGGCGCac----CGAGCAGCGCCUCg -3'
miRNA:   3'- -GGCUGCGgcuccaGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 18369 0.7 0.251772
Target:  5'- gCCGGCGgCGAGGUUG-GCcuugccgauGGCGCCg- -3'
miRNA:   3'- -GGCUGCgGCUCCAGCuCG---------UCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.