miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26473 3' -59.2 NC_005357.1 + 29896 1.12 0.000205
Target:  5'- aCCGACGCCGAGGUCGAGCAGCACCUCg -3'
miRNA:   3'- -GGCUGCGGCUCCAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 7608 0.69 0.314935
Target:  5'- -gGACaGCaCGuGGUCGcGCAGCGCCg- -3'
miRNA:   3'- ggCUG-CG-GCuCCAGCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 35193 0.69 0.314935
Target:  5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3'
miRNA:   3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 31674 0.66 0.464491
Target:  5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3'
miRNA:   3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 33870 0.75 0.112824
Target:  5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3'
miRNA:   3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5'
26473 3' -59.2 NC_005357.1 + 10492 0.75 0.115997
Target:  5'- uUCGGaGUCGugcGuGUCGAGCAGCGCCUCg -3'
miRNA:   3'- -GGCUgCGGCu--C-CAGCUCGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 34794 0.73 0.1655
Target:  5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3'
miRNA:   3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 33749 0.73 0.170007
Target:  5'- aCCaACGCCGAGGUgCGcGCGGCACg-- -3'
miRNA:   3'- -GGcUGCGGCUCCA-GCuCGUCGUGgag -5'
26473 3' -59.2 NC_005357.1 + 31628 0.71 0.204732
Target:  5'- gCCG-CGCCGAGG-CGcAGCAGUACaugCa -3'
miRNA:   3'- -GGCuGCGGCUCCaGC-UCGUCGUGga-G- -5'
26473 3' -59.2 NC_005357.1 + 21667 0.69 0.307362
Target:  5'- gCGAUgaGUCGAGcG-CGGcGCAGCGCCUCu -3'
miRNA:   3'- gGCUG--CGGCUC-CaGCU-CGUCGUGGAG- -5'
26473 3' -59.2 NC_005357.1 + 11338 0.69 0.28548
Target:  5'- gCCGGCcugcaCCGAGGUgaGcAGCGGCACCa- -3'
miRNA:   3'- -GGCUGc----GGCUCCAg-C-UCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 17988 0.72 0.199419
Target:  5'- aUGuCGCCGAGGccgCGcGCGGCACCg- -3'
miRNA:   3'- gGCuGCGGCUCCa--GCuCGUCGUGGag -5'
26473 3' -59.2 NC_005357.1 + 15974 0.8 0.054079
Target:  5'- aCgGAUGCCGAGGUCGAGC-GCAUC-Cg -3'
miRNA:   3'- -GgCUGCGGCUCCAGCUCGuCGUGGaG- -5'
26473 3' -59.2 NC_005357.1 + 14351 0.69 0.288325
Target:  5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3'
miRNA:   3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5'
26473 3' -59.2 NC_005357.1 + 39327 0.77 0.090215
Target:  5'- aUGACGCCGcaucAGGUCGAGaCAGCACaagugCUCa -3'
miRNA:   3'- gGCUGCGGC----UCCAGCUC-GUCGUG-----GAG- -5'
26473 3' -59.2 NC_005357.1 + 4830 0.72 0.199419
Target:  5'- gCCGGCGCCGucGUCGAauucacggaaaGCGGCcaGCUUCc -3'
miRNA:   3'- -GGCUGCGGCucCAGCU-----------CGUCG--UGGAG- -5'
26473 3' -59.2 NC_005357.1 + 14931 0.69 0.307362
Target:  5'- gCUGGCgGCCGAGGcCGc-CGGCAuCCUCg -3'
miRNA:   3'- -GGCUG-CGGCUCCaGCucGUCGU-GGAG- -5'
26473 3' -59.2 NC_005357.1 + 35155 0.69 0.314935
Target:  5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3'
miRNA:   3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5'
26473 3' -59.2 NC_005357.1 + 10311 0.76 0.103783
Target:  5'- -gGGCGUCGAGGUCG-GCAGCgGCCa- -3'
miRNA:   3'- ggCUGCGGCUCCAGCuCGUCG-UGGag -5'
26473 3' -59.2 NC_005357.1 + 13886 0.74 0.129543
Target:  5'- gCCGGCgGCCGcaAGGUCGugccguucaacaAGCAGCGCCg- -3'
miRNA:   3'- -GGCUG-CGGC--UCCAGC------------UCGUCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.