Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26475 | 3' | -60.1 | NC_005357.1 | + | 41048 | 0.74 | 0.11007 |
Target: 5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3' miRNA: 3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 39338 | 0.66 | 0.373939 |
Target: 5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3' miRNA: 3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 38598 | 0.66 | 0.400563 |
Target: 5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3' miRNA: 3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 35346 | 0.76 | 0.080774 |
Target: 5'- ---gGCGCGcCGUGGguAGGCCGcGGCGUCa -3' miRNA: 3'- cuaaCGCGC-GCACC--UCCGGC-UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 34990 | 0.7 | 0.200322 |
Target: 5'- ---aGuCGCGCGUcGAGGaaguguCCGGGCGCCc -3' miRNA: 3'- cuaaC-GCGCGCAcCUCC------GGCUCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 34501 | 0.72 | 0.153211 |
Target: 5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3' miRNA: 3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 34223 | 0.67 | 0.34854 |
Target: 5'- ---aGCGCGacuacGAGGCCGuGCGCg -3' miRNA: 3'- cuaaCGCGCgcac-CUCCGGCuCGCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 32468 | 0.66 | 0.400563 |
Target: 5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3' miRNA: 3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 29342 | 1.11 | 0.00015 |
Target: 5'- aGAUUGCGCGCGUGGAGGCCGAGCGCCa -3' miRNA: 3'- -CUAACGCGCGCACCUCCGGCUCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 28623 | 0.67 | 0.327543 |
Target: 5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3' miRNA: 3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 27826 | 0.66 | 0.382679 |
Target: 5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3' miRNA: 3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 27667 | 0.67 | 0.34854 |
Target: 5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3' miRNA: 3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 26873 | 0.66 | 0.365335 |
Target: 5'- uGAcgGCGCcauugaccugGaCGUGGAGGCCG-GCaCCg -3' miRNA: 3'- -CUaaCGCG----------C-GCACCUCCGGCuCGcGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 26618 | 0.74 | 0.104088 |
Target: 5'- --cUGCGCG-GUGGuGGCCGAGgGUa -3' miRNA: 3'- cuaACGCGCgCACCuCCGGCUCgCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 26239 | 0.68 | 0.286973 |
Target: 5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3' miRNA: 3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 24116 | 0.73 | 0.132528 |
Target: 5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3' miRNA: 3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 23750 | 0.68 | 0.272983 |
Target: 5'- ---gGCcCGCGUGGuguaacAGGCCGGGgGCg -3' miRNA: 3'- cuaaCGcGCGCACC------UCCGGCUCgCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 21986 | 0.66 | 0.382679 |
Target: 5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3' miRNA: 3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 19200 | 0.7 | 0.228315 |
Target: 5'- ---gGCGCG-GUcGGuGGCCGAG-GCCg -3' miRNA: 3'- cuaaCGCGCgCA-CCuCCGGCUCgCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 18841 | 0.68 | 0.309005 |
Target: 5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3' miRNA: 3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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