Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26475 | 3' | -60.1 | NC_005357.1 | + | 15273 | 0.69 | 0.240409 |
Target: 5'- cGcgUGCgGCGCGUGGGGGacuuCGAGUGa- -3' miRNA: 3'- -CuaACG-CGCGCACCUCCg---GCUCGCgg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 13796 | 0.69 | 0.234297 |
Target: 5'- --cUGCGCGCGgaacuGGCCGGccucauccGCGCCc -3' miRNA: 3'- cuaACGCGCGCaccu-CCGGCU--------CGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 19200 | 0.7 | 0.228315 |
Target: 5'- ---gGCGCG-GUcGGuGGCCGAG-GCCg -3' miRNA: 3'- cuaaCGCGCgCA-CCuCCGGCUCgCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 16061 | 0.7 | 0.222464 |
Target: 5'- ---cGCGCaCGUGGccGCCGcgcgcGGCGCCg -3' miRNA: 3'- cuaaCGCGcGCACCucCGGC-----UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 8137 | 0.7 | 0.205671 |
Target: 5'- uGGUUGUGgGCGUGcGGGuGUCG-GCGCUg -3' miRNA: 3'- -CUAACGCgCGCAC-CUC-CGGCuCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 14209 | 0.7 | 0.205671 |
Target: 5'- ----cCGCGCGUGGucgucggcguGGCCGAccuggacaagGCGCCg -3' miRNA: 3'- cuaacGCGCGCACCu---------CCGGCU----------CGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 34990 | 0.7 | 0.200322 |
Target: 5'- ---aGuCGCGCGUcGAGGaaguguCCGGGCGCCc -3' miRNA: 3'- cuaaC-GCGCGCAcCUCC------GGCUCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 34501 | 0.72 | 0.153211 |
Target: 5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3' miRNA: 3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 4166 | 0.73 | 0.133627 |
Target: 5'- -cUUGCGCGcCGUGGucgAGGUguagccagUGGGCGCCg -3' miRNA: 3'- cuAACGCGC-GCACC---UCCG--------GCUCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 24116 | 0.73 | 0.132528 |
Target: 5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3' miRNA: 3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 13295 | 0.74 | 0.119648 |
Target: 5'- cGAUUGCaGCGCGccGGGGCCG-GCGUUg -3' miRNA: 3'- -CUAACG-CGCGCacCUCCGGCuCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 41048 | 0.74 | 0.11007 |
Target: 5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3' miRNA: 3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 26618 | 0.74 | 0.104088 |
Target: 5'- --cUGCGCG-GUGGuGGCCGAGgGUa -3' miRNA: 3'- cuaACGCGCgCACCuCCGGCUCgCGg -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 35346 | 0.76 | 0.080774 |
Target: 5'- ---gGCGCGcCGUGGguAGGCCGcGGCGUCa -3' miRNA: 3'- cuaaCGCGC-GCACC--UCCGGC-UCGCGG- -5' |
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26475 | 3' | -60.1 | NC_005357.1 | + | 29342 | 1.11 | 0.00015 |
Target: 5'- aGAUUGCGCGCGUGGAGGCCGAGCGCCa -3' miRNA: 3'- -CUAACGCGCGCACCUCCGGCUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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