Results 41 - 60 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26475 | 5' | -56 | NC_005357.1 | + | 26162 | 0.69 | 0.420627 |
Target: 5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3' miRNA: 3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 19130 | 0.69 | 0.420627 |
Target: 5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3' miRNA: 3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 8550 | 0.69 | 0.419664 |
Target: 5'- -cGACaGCCGCGCcgauggCGGGCAgcgacagGCGCGAc -3' miRNA: 3'- guCUGcCGGCGUGa-----GUUCGU-------UGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 20758 | 0.69 | 0.411061 |
Target: 5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3' miRNA: 3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 27055 | 0.69 | 0.411061 |
Target: 5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3' miRNA: 3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 16748 | 0.69 | 0.408217 |
Target: 5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3' miRNA: 3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 25620 | 0.69 | 0.40163 |
Target: 5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3' miRNA: 3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 7831 | 0.69 | 0.40163 |
Target: 5'- aGGcGCGGCUGCACgaugacCAGGCGcACGCGc -3' miRNA: 3'- gUC-UGCCGGCGUGa-----GUUCGU-UGCGCu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 18209 | 0.69 | 0.400695 |
Target: 5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3' miRNA: 3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 2937 | 0.7 | 0.383188 |
Target: 5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3' miRNA: 3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 17349 | 0.7 | 0.356601 |
Target: 5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3' miRNA: 3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 35085 | 0.7 | 0.356601 |
Target: 5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3' miRNA: 3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 5152 | 0.7 | 0.348031 |
Target: 5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3' miRNA: 3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 6591 | 0.71 | 0.331336 |
Target: 5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3' miRNA: 3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 24168 | 0.71 | 0.331336 |
Target: 5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3' miRNA: 3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 21243 | 0.71 | 0.323212 |
Target: 5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3' miRNA: 3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 26021 | 0.71 | 0.323212 |
Target: 5'- --cGCGGCCGUguccuACuUCGAGCAACGcCGAu -3' miRNA: 3'- gucUGCCGGCG-----UG-AGUUCGUUGC-GCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 10325 | 0.71 | 0.315238 |
Target: 5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3' miRNA: 3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 37376 | 0.71 | 0.315238 |
Target: 5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3' miRNA: 3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5' |
|||||||
26475 | 5' | -56 | NC_005357.1 | + | 25783 | 0.71 | 0.307413 |
Target: 5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3' miRNA: 3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home