Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26475 | 5' | -56 | NC_005357.1 | + | 21652 | 0.67 | 0.512264 |
Target: 5'- uGGACGugcaGCCGCGCgaugagUCGAGCGcgGCGCa- -3' miRNA: 3'- gUCUGC----CGGCGUG------AGUUCGU--UGCGcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 12957 | 0.67 | 0.50588 |
Target: 5'- gCGGAacUGGCCGCgcGCUCGucgccuggugccaggAGCAccuggGCGCGAc -3' miRNA: 3'- -GUCU--GCCGGCG--UGAGU---------------UCGU-----UGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 34879 | 0.67 | 0.501643 |
Target: 5'- cCGGugGcGCCGCGgaUCGAGCAcgccgccgaGCGCa- -3' miRNA: 3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 4176 | 0.67 | 0.501643 |
Target: 5'- gUAGcCGGCCGC-CUCGauGGCGGgcauguuggcCGCGAg -3' miRNA: 3'- -GUCuGCCGGCGuGAGU--UCGUU----------GCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 28895 | 0.68 | 0.4807 |
Target: 5'- uCAGGCGGCCGaCAgUU---CGGCGCGGa -3' miRNA: 3'- -GUCUGCCGGC-GUgAGuucGUUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 11833 | 0.68 | 0.4807 |
Target: 5'- aCAGAcCGGCCGCGCcgCGguuGGCcuGgGCGAa -3' miRNA: 3'- -GUCU-GCCGGCGUGa-GU---UCGu-UgCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 15009 | 0.68 | 0.470389 |
Target: 5'- cCGGGCGcGgUGCGC-CAGGCG-CGCGAc -3' miRNA: 3'- -GUCUGC-CgGCGUGaGUUCGUuGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 20241 | 0.68 | 0.470389 |
Target: 5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3' miRNA: 3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 13620 | 0.68 | 0.467317 |
Target: 5'- -cGACGGCgCGCuggcuGCUCAagaucggcaaccagGGCaAGCGCGAc -3' miRNA: 3'- guCUGCCG-GCG-----UGAGU--------------UCG-UUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 36346 | 0.68 | 0.460191 |
Target: 5'- ----aGGCCGCGCUCGacgacuucgaGGCggUGUGAu -3' miRNA: 3'- gucugCCGGCGUGAGU----------UCGuuGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 814 | 0.68 | 0.460191 |
Target: 5'- gCAGGUGGCUGgGCUUGAGC-GCGCGc -3' miRNA: 3'- -GUCUGCCGGCgUGAGUUCGuUGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 28672 | 0.68 | 0.460191 |
Target: 5'- -cGGCGGCCuCGC-CAGcGCGGCGCGc -3' miRNA: 3'- guCUGCCGGcGUGaGUU-CGUUGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 28571 | 0.68 | 0.460191 |
Target: 5'- --cGCGGCgCGCACgUCGgccaccGGCAGCGUGGu -3' miRNA: 3'- gucUGCCG-GCGUG-AGU------UCGUUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 38392 | 0.68 | 0.450112 |
Target: 5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3' miRNA: 3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 28339 | 0.68 | 0.450112 |
Target: 5'- -cGAUGGCCuugGC-CUCGucgGGCAGCGCGc -3' miRNA: 3'- guCUGCCGG---CGuGAGU---UCGUUGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 10062 | 0.68 | 0.440156 |
Target: 5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3' miRNA: 3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 37261 | 0.68 | 0.440156 |
Target: 5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3' miRNA: 3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 24011 | 0.69 | 0.430327 |
Target: 5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3' miRNA: 3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 12454 | 0.69 | 0.430327 |
Target: 5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3' miRNA: 3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 34208 | 0.69 | 0.430327 |
Target: 5'- -uGACGGCCGC---CGAcCAGCGCGAc -3' miRNA: 3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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