miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 5152 0.7 0.348031
Target:  5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3'
miRNA:   3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5'
26475 5' -56 NC_005357.1 + 17349 0.7 0.356601
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 35085 0.7 0.356601
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26475 5' -56 NC_005357.1 + 2937 0.7 0.383188
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 18209 0.69 0.400695
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 25620 0.69 0.40163
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 7831 0.69 0.40163
Target:  5'- aGGcGCGGCUGCACgaugacCAGGCGcACGCGc -3'
miRNA:   3'- gUC-UGCCGGCGUGa-----GUUCGU-UGCGCu -5'
26475 5' -56 NC_005357.1 + 16748 0.69 0.408217
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 27055 0.69 0.411061
Target:  5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3'
miRNA:   3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 20758 0.69 0.411061
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 8550 0.69 0.419664
Target:  5'- -cGACaGCCGCGCcgauggCGGGCAgcgacagGCGCGAc -3'
miRNA:   3'- guCUGcCGGCGUGa-----GUUCGU-------UGCGCU- -5'
26475 5' -56 NC_005357.1 + 26162 0.69 0.420627
Target:  5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3'
miRNA:   3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5'
26475 5' -56 NC_005357.1 + 19130 0.69 0.420627
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26475 5' -56 NC_005357.1 + 12454 0.69 0.430327
Target:  5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3'
miRNA:   3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5'
26475 5' -56 NC_005357.1 + 34208 0.69 0.430327
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 24011 0.69 0.430327
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 37261 0.68 0.440156
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 10062 0.68 0.440156
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26475 5' -56 NC_005357.1 + 38392 0.68 0.450112
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 28339 0.68 0.450112
Target:  5'- -cGAUGGCCuugGC-CUCGucgGGCAGCGCGc -3'
miRNA:   3'- guCUGCCGG---CGuGAGU---UCGUUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.