miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 41236 0.67 0.512264
Target:  5'- -cGACGG-CGUagaaAUUCAcGGCAGCGCGAu -3'
miRNA:   3'- guCUGCCgGCG----UGAGU-UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 12957 0.67 0.50588
Target:  5'- gCGGAacUGGCCGCgcGCUCGucgccuggugccaggAGCAccuggGCGCGAc -3'
miRNA:   3'- -GUCU--GCCGGCG--UGAGU---------------UCGU-----UGCGCU- -5'
26475 5' -56 NC_005357.1 + 30022 0.67 0.544651
Target:  5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3'
miRNA:   3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 4176 0.67 0.501643
Target:  5'- gUAGcCGGCCGC-CUCGauGGCGGgcauguuggcCGCGAg -3'
miRNA:   3'- -GUCuGCCGGCGuGAGU--UCGUU----------GCGCU- -5'
26475 5' -56 NC_005357.1 + 11833 0.68 0.4807
Target:  5'- aCAGAcCGGCCGCGCcgCGguuGGCcuGgGCGAa -3'
miRNA:   3'- -GUCU-GCCGGCGUGa-GU---UCGu-UgCGCU- -5'
26475 5' -56 NC_005357.1 + 37261 0.68 0.440156
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 28895 0.68 0.4807
Target:  5'- uCAGGCGGCCGaCAgUU---CGGCGCGGa -3'
miRNA:   3'- -GUCUGCCGGC-GUgAGuucGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 10062 0.68 0.440156
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26475 5' -56 NC_005357.1 + 38392 0.68 0.450112
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 13620 0.68 0.467317
Target:  5'- -cGACGGCgCGCuggcuGCUCAagaucggcaaccagGGCaAGCGCGAc -3'
miRNA:   3'- guCUGCCG-GCG-----UGAGU--------------UCG-UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 814 0.68 0.460191
Target:  5'- gCAGGUGGCUGgGCUUGAGC-GCGCGc -3'
miRNA:   3'- -GUCUGCCGGCgUGAGUUCGuUGCGCu -5'
26475 5' -56 NC_005357.1 + 20241 0.68 0.470389
Target:  5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3'
miRNA:   3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5'
26475 5' -56 NC_005357.1 + 36346 0.68 0.460191
Target:  5'- ----aGGCCGCGCUCGacgacuucgaGGCggUGUGAu -3'
miRNA:   3'- gucugCCGGCGUGAGU----------UCGuuGCGCU- -5'
26475 5' -56 NC_005357.1 + 28672 0.68 0.460191
Target:  5'- -cGGCGGCCuCGC-CAGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGcGUGaGUU-CGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 28339 0.68 0.450112
Target:  5'- -cGAUGGCCuugGC-CUCGucgGGCAGCGCGc -3'
miRNA:   3'- guCUGCCGG---CGuGAGU---UCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 15009 0.68 0.470389
Target:  5'- cCGGGCGcGgUGCGC-CAGGCG-CGCGAc -3'
miRNA:   3'- -GUCUGC-CgGCGUGaGUUCGUuGCGCU- -5'
26475 5' -56 NC_005357.1 + 28571 0.68 0.460191
Target:  5'- --cGCGGCgCGCACgUCGgccaccGGCAGCGUGGu -3'
miRNA:   3'- gucUGCCG-GCGUG-AGU------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 19130 0.69 0.420627
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26475 5' -56 NC_005357.1 + 16748 0.69 0.408217
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 25620 0.69 0.40163
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.