miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 12454 0.69 0.430327
Target:  5'- -cGACGGCUGCAUcCAGGCcgucgugcgcCGCGAc -3'
miRNA:   3'- guCUGCCGGCGUGaGUUCGuu--------GCGCU- -5'
26475 5' -56 NC_005357.1 + 12957 0.67 0.50588
Target:  5'- gCGGAacUGGCCGCgcGCUCGucgccuggugccaggAGCAccuggGCGCGAc -3'
miRNA:   3'- -GUCU--GCCGGCG--UGAGU---------------UCGU-----UGCGCU- -5'
26475 5' -56 NC_005357.1 + 13620 0.68 0.467317
Target:  5'- -cGACGGCgCGCuggcuGCUCAagaucggcaaccagGGCaAGCGCGAc -3'
miRNA:   3'- guCUGCCG-GCG-----UGAGU--------------UCG-UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 13888 0.71 0.292211
Target:  5'- -cGGCGGCCGCAaggucgugccgUUCAacaAGCAGCGCc- -3'
miRNA:   3'- guCUGCCGGCGU-----------GAGU---UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 14594 0.73 0.219018
Target:  5'- gCGGcGCGGCCgGCGCcaccgCGGGCAGCGCGc -3'
miRNA:   3'- -GUC-UGCCGG-CGUGa----GUUCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 15009 0.68 0.470389
Target:  5'- cCGGGCGcGgUGCGC-CAGGCG-CGCGAc -3'
miRNA:   3'- -GUCUGC-CgGCGUGaGUUCGUuGCGCU- -5'
26475 5' -56 NC_005357.1 + 16748 0.69 0.408217
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 16806 0.75 0.166636
Target:  5'- cCAGuuGGUCGCGCcCAGGCGGCGCa- -3'
miRNA:   3'- -GUCugCCGGCGUGaGUUCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 17134 0.73 0.21843
Target:  5'- aGGGcCGGCCGCACgaccucaaggcauUCGacgaagugaccgAGCAGCGCGAg -3'
miRNA:   3'- gUCU-GCCGGCGUG-------------AGU------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 17349 0.7 0.356601
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 18209 0.69 0.400695
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 18569 0.67 0.533775
Target:  5'- uGGA-GGCCGCGCUCGcGGUGACGg-- -3'
miRNA:   3'- gUCUgCCGGCGUGAGU-UCGUUGCgcu -5'
26475 5' -56 NC_005357.1 + 19130 0.69 0.420627
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26475 5' -56 NC_005357.1 + 19975 0.66 0.59324
Target:  5'- uCGGGCaGGCCGCcgauguccgcguagaACUCGccaacuugcucGGCAugGCGc -3'
miRNA:   3'- -GUCUG-CCGGCG---------------UGAGU-----------UCGUugCGCu -5'
26475 5' -56 NC_005357.1 + 20241 0.68 0.470389
Target:  5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3'
miRNA:   3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5'
26475 5' -56 NC_005357.1 + 20758 0.69 0.411061
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 21243 0.71 0.323212
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 21298 0.66 0.555598
Target:  5'- -cGGCGGCCaaGCU-GGGCAGCGuCGAu -3'
miRNA:   3'- guCUGCCGGcgUGAgUUCGUUGC-GCU- -5'
26475 5' -56 NC_005357.1 + 21652 0.67 0.512264
Target:  5'- uGGACGugcaGCCGCGCgaugagUCGAGCGcgGCGCa- -3'
miRNA:   3'- gUCUGC----CGGCGUG------AGUUCGU--UGCGcu -5'
26475 5' -56 NC_005357.1 + 24011 0.69 0.430327
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.