miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 814 0.68 0.460191
Target:  5'- gCAGGUGGCUGgGCUUGAGC-GCGCGc -3'
miRNA:   3'- -GUCUGCCGGCgUGAGUUCGuUGCGCu -5'
26475 5' -56 NC_005357.1 + 1357 0.66 0.555598
Target:  5'- -cGGCGGCCuuGCGCaUCcGGCGAC-CGAa -3'
miRNA:   3'- guCUGCCGG--CGUG-AGuUCGUUGcGCU- -5'
26475 5' -56 NC_005357.1 + 2937 0.7 0.383188
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 3456 0.67 0.512264
Target:  5'- aCAGAC-GCCGCGCgcccCGAagAACGCGAa -3'
miRNA:   3'- -GUCUGcCGGCGUGa---GUUcgUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 3492 0.73 0.219018
Target:  5'- -cGACGGcCCGCugUaccaGAGCGcaGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugAg---UUCGU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 4039 0.66 0.599934
Target:  5'- aAGcCGGCCGCGg-CGAGCGGCaggccaGCGGc -3'
miRNA:   3'- gUCuGCCGGCGUgaGUUCGUUG------CGCU- -5'
26475 5' -56 NC_005357.1 + 4176 0.67 0.501643
Target:  5'- gUAGcCGGCCGC-CUCGauGGCGGgcauguuggcCGCGAg -3'
miRNA:   3'- -GUCuGCCGGCGuGAGU--UCGUU----------GCGCU- -5'
26475 5' -56 NC_005357.1 + 4353 0.66 0.599934
Target:  5'- gCAGAggaauCGGCCGgACggCAGGCGgauGCGCa- -3'
miRNA:   3'- -GUCU-----GCCGGCgUGa-GUUCGU---UGCGcu -5'
26475 5' -56 NC_005357.1 + 5152 0.7 0.348031
Target:  5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3'
miRNA:   3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5'
26475 5' -56 NC_005357.1 + 6591 0.71 0.331336
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26475 5' -56 NC_005357.1 + 6739 0.66 0.588785
Target:  5'- uGGGCcGCCGCGCUCAA-UAGCG-GAa -3'
miRNA:   3'- gUCUGcCGGCGUGAGUUcGUUGCgCU- -5'
26475 5' -56 NC_005357.1 + 7519 0.66 0.555598
Target:  5'- aGGAUGGCguugucuaccgUGCGCUCG-GCGGCGUGc -3'
miRNA:   3'- gUCUGCCG-----------GCGUGAGUuCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 7831 0.69 0.40163
Target:  5'- aGGcGCGGCUGCACgaugacCAGGCGcACGCGc -3'
miRNA:   3'- gUC-UGCCGGCGUGa-----GUUCGU-UGCGCu -5'
26475 5' -56 NC_005357.1 + 8550 0.69 0.419664
Target:  5'- -cGACaGCCGCGCcgauggCGGGCAgcgacagGCGCGAc -3'
miRNA:   3'- guCUGcCGGCGUGa-----GUUCGU-------UGCGCU- -5'
26475 5' -56 NC_005357.1 + 8764 0.66 0.566608
Target:  5'- --cACGuGCCGC-UUCGGGCAgcACGCGGc -3'
miRNA:   3'- gucUGC-CGGCGuGAGUUCGU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 8833 0.66 0.599934
Target:  5'- uCGGGCcaGCCGCAacgCGGGCcAGCGCGu -3'
miRNA:   3'- -GUCUGc-CGGCGUga-GUUCG-UUGCGCu -5'
26475 5' -56 NC_005357.1 + 8914 0.66 0.599934
Target:  5'- -cGGCGG-CGCGCUCGauGGCuucgGGCGUGGa -3'
miRNA:   3'- guCUGCCgGCGUGAGU--UCG----UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 10062 0.68 0.440156
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26475 5' -56 NC_005357.1 + 10325 0.71 0.315238
Target:  5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3'
miRNA:   3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 11833 0.68 0.4807
Target:  5'- aCAGAcCGGCCGCGCcgCGguuGGCcuGgGCGAa -3'
miRNA:   3'- -GUCU-GCCGGCGUGa-GU---UCGu-UgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.