miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 41842 0.66 0.615589
Target:  5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3'
miRNA:   3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5'
26475 5' -56 NC_005357.1 + 41236 0.67 0.512264
Target:  5'- -cGACGG-CGUagaaAUUCAcGGCAGCGCGAu -3'
miRNA:   3'- guCUGCCgGCG----UGAGU-UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 39697 0.72 0.284834
Target:  5'- gCAGcGCcgGGCCGCGCUCAAGCGuccggccaACGUGu -3'
miRNA:   3'- -GUC-UG--CCGGCGUGAGUUCGU--------UGCGCu -5'
26475 5' -56 NC_005357.1 + 38721 0.75 0.176125
Target:  5'- gCGGAUGcGCCGCAUg-GGGCAGCGCGu -3'
miRNA:   3'- -GUCUGC-CGGCGUGagUUCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 38392 0.68 0.450112
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 38056 0.66 0.588785
Target:  5'- aAGuCGGCCGuCGCcuUCAcgcgcaccGGCAACGCa- -3'
miRNA:   3'- gUCuGCCGGC-GUG--AGU--------UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 38024 0.71 0.299738
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 37376 0.71 0.315238
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5'
26475 5' -56 NC_005357.1 + 37261 0.68 0.440156
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 36346 0.68 0.460191
Target:  5'- ----aGGCCGCGCUCGacgacuucgaGGCggUGUGAu -3'
miRNA:   3'- gucugCCGGCGUGAGU----------UCGuuGCGCU- -5'
26475 5' -56 NC_005357.1 + 35706 0.74 0.207522
Target:  5'- -cGAC-GCCGUGCUCAAGCAgauGCGCGc -3'
miRNA:   3'- guCUGcCGGCGUGAGUUCGU---UGCGCu -5'
26475 5' -56 NC_005357.1 + 35187 0.66 0.588785
Target:  5'- uGGGCGGCCGaCAUcgcCGAGgGugaGCGCGGc -3'
miRNA:   3'- gUCUGCCGGC-GUGa--GUUCgU---UGCGCU- -5'
26475 5' -56 NC_005357.1 + 35085 0.7 0.356601
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26475 5' -56 NC_005357.1 + 34879 0.67 0.501643
Target:  5'- cCGGugGcGCCGCGgaUCGAGCAcgccgccgaGCGCa- -3'
miRNA:   3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5'
26475 5' -56 NC_005357.1 + 34208 0.69 0.430327
Target:  5'- -uGACGGCCGC---CGAcCAGCGCGAc -3'
miRNA:   3'- guCUGCCGGCGugaGUUcGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 33065 0.75 0.181047
Target:  5'- gCAcGCGGCCGCAUcaUCAAGCAACuGCa- -3'
miRNA:   3'- -GUcUGCCGGCGUG--AGUUCGUUG-CGcu -5'
26475 5' -56 NC_005357.1 + 30416 0.71 0.307413
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 30258 0.66 0.577673
Target:  5'- uCAGAUaGCUGCGCU--GGUcGCGCGAg -3'
miRNA:   3'- -GUCUGcCGGCGUGAguUCGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 30022 0.67 0.544651
Target:  5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3'
miRNA:   3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 29757 0.67 0.512264
Target:  5'- uCGGccuCGGCUGCuGC-CAGGCGcguGCGCGAg -3'
miRNA:   3'- -GUCu--GCCGGCG-UGaGUUCGU---UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.