miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 29379 1.08 0.00065
Target:  5'- gCAGACGGCCGCACUCAAGCAACGCGAu -3'
miRNA:   3'- -GUCUGCCGGCGUGAGUUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 29580 0.8 0.084006
Target:  5'- uCAGGuCGGCCGCGCcCAGGC-GCGCGGu -3'
miRNA:   3'- -GUCU-GCCGGCGUGaGUUCGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 16806 0.75 0.166636
Target:  5'- cCAGuuGGUCGCGCcCAGGCGGCGCa- -3'
miRNA:   3'- -GUCugCCGGCGUGaGUUCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 38721 0.75 0.176125
Target:  5'- gCGGAUGcGCCGCAUg-GGGCAGCGCGu -3'
miRNA:   3'- -GUCUGC-CGGCGUGagUUCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 33065 0.75 0.181047
Target:  5'- gCAcGCGGCCGCAUcaUCAAGCAACuGCa- -3'
miRNA:   3'- -GUcUGCCGGCGUG--AGUUCGUUG-CGcu -5'
26475 5' -56 NC_005357.1 + 35706 0.74 0.207522
Target:  5'- -cGAC-GCCGUGCUCAAGCAgauGCGCGc -3'
miRNA:   3'- guCUGcCGGCGUGAGUUCGU---UGCGCu -5'
26475 5' -56 NC_005357.1 + 17134 0.73 0.21843
Target:  5'- aGGGcCGGCCGCACgaccucaaggcauUCGacgaagugaccgAGCAGCGCGAg -3'
miRNA:   3'- gUCU-GCCGGCGUG-------------AGU------------UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 3492 0.73 0.219018
Target:  5'- -cGACGGcCCGCugUaccaGAGCGcaGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugAg---UUCGU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 14594 0.73 0.219018
Target:  5'- gCGGcGCGGCCgGCGCcaccgCGGGCAGCGCGc -3'
miRNA:   3'- -GUC-UGCCGG-CGUGa----GUUCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 39697 0.72 0.284834
Target:  5'- gCAGcGCcgGGCCGCGCUCAAGCGuccggccaACGUGu -3'
miRNA:   3'- -GUC-UG--CCGGCGUGAGUUCGU--------UGCGCu -5'
26475 5' -56 NC_005357.1 + 13888 0.71 0.292211
Target:  5'- -cGGCGGCCGCAaggucgugccgUUCAacaAGCAGCGCc- -3'
miRNA:   3'- guCUGCCGGCGU-----------GAGU---UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 38024 0.71 0.299738
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 25783 0.71 0.307413
Target:  5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 30416 0.71 0.307413
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 10325 0.71 0.315238
Target:  5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3'
miRNA:   3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 37376 0.71 0.315238
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5'
26475 5' -56 NC_005357.1 + 21243 0.71 0.323212
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 26021 0.71 0.323212
Target:  5'- --cGCGGCCGUguccuACuUCGAGCAACGcCGAu -3'
miRNA:   3'- gucUGCCGGCG-----UG-AGUUCGUUGC-GCU- -5'
26475 5' -56 NC_005357.1 + 24168 0.71 0.331336
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5'
26475 5' -56 NC_005357.1 + 6591 0.71 0.331336
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.