Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26476 | 5' | -55.8 | NC_005357.1 | + | 16595 | 0.68 | 0.485324 |
Target: 5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3' miRNA: 3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 22498 | 0.68 | 0.507372 |
Target: 5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3' miRNA: 3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 29263 | 0.68 | 0.507372 |
Target: 5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3' miRNA: 3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 10293 | 0.67 | 0.514817 |
Target: 5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3' miRNA: 3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 18264 | 0.67 | 0.518021 |
Target: 5'- cGCCGAagcgcgcagcCGUCGAGGCGCuGggcCAGGc -3' miRNA: 3'- cCGGCU----------GUAGCUCCGCGuCaacGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 6371 | 0.67 | 0.518021 |
Target: 5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3' miRNA: 3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 33447 | 0.67 | 0.528757 |
Target: 5'- cGCgCGGCGaggaaaUCGAGGCGCuuaccgacgUGCGGAu -3' miRNA: 3'- cCG-GCUGU------AGCUCCGCGuca------ACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 2774 | 0.67 | 0.572441 |
Target: 5'- uGCCGACAccUCGAcguuGCGCAGgUGCGc- -3' miRNA: 3'- cCGGCUGU--AGCUc---CGCGUCaACGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 26678 | 0.66 | 0.583509 |
Target: 5'- uGG-CGGCAaCGAGGUGCGGUaUGUcGAg -3' miRNA: 3'- -CCgGCUGUaGCUCCGCGUCA-ACGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 17692 | 0.66 | 0.583509 |
Target: 5'- gGGUCGagGCcgCGcAGGCGCGGUggaaGCGGc -3' miRNA: 3'- -CCGGC--UGuaGC-UCCGCGUCAa---CGUCu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 17648 | 0.66 | 0.583509 |
Target: 5'- cGCgGGCAUCGAGGaCGacccGUgGCAGGu -3' miRNA: 3'- cCGgCUGUAGCUCC-GCgu--CAaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 19634 | 0.66 | 0.583509 |
Target: 5'- gGGCCgcGACAUCGGccaGCGUcgGGUUGguGGu -3' miRNA: 3'- -CCGG--CUGUAGCUc--CGCG--UCAACguCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 41609 | 0.66 | 0.583509 |
Target: 5'- uGGCCGACGuUCGgcaagggcuGGGCGCGGc-GCGu- -3' miRNA: 3'- -CCGGCUGU-AGC---------UCCGCGUCaaCGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 17449 | 0.66 | 0.583509 |
Target: 5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3' miRNA: 3'- cCGGcUGUAGCUCCGcGUCaACGucu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 8127 | 0.66 | 0.583509 |
Target: 5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3' miRNA: 3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 31627 | 0.66 | 0.583509 |
Target: 5'- aGCCG-CGcCGAGGCGCAGcaguacaUGCAa- -3' miRNA: 3'- cCGGCuGUaGCUCCGCGUCa------ACGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35755 | 0.66 | 0.594618 |
Target: 5'- cGGCCcugaACAUCGGcguGGCGCAGaccaugagcGCGGAc -3' miRNA: 3'- -CCGGc---UGUAGCU---CCGCGUCaa-------CGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 36352 | 0.66 | 0.594618 |
Target: 5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3' miRNA: 3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 31676 | 0.66 | 0.605759 |
Target: 5'- gGGCCGAaGUCGAGcGCGCccuuGgcgaGCAGc -3' miRNA: 3'- -CCGGCUgUAGCUC-CGCGu---Caa--CGUCu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 829 | 0.66 | 0.616925 |
Target: 5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3' miRNA: 3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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