miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 5' -55.8 NC_005357.1 + 29279 1.11 0.000452
Target:  5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3'
miRNA:   3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 23560 0.78 0.111117
Target:  5'- cGGCCGACAUCGccggcAGGUGCGG--GCGGGg -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGUCaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 7817 0.77 0.139481
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26476 5' -55.8 NC_005357.1 + 13311 0.75 0.1842
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 35191 0.75 0.18931
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 4172 0.74 0.222648
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 37645 0.71 0.31987
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 11600 0.71 0.327914
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 27719 0.7 0.352937
Target:  5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3'
miRNA:   3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 35179 0.7 0.352937
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 2436 0.7 0.361573
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26476 5' -55.8 NC_005357.1 + 33246 0.7 0.370355
Target:  5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3'
miRNA:   3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5'
26476 5' -55.8 NC_005357.1 + 28900 0.69 0.416398
Target:  5'- cGGCCGACAguucGGCGCGGacgGCAa- -3'
miRNA:   3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5'
26476 5' -55.8 NC_005357.1 + 24163 0.69 0.416398
Target:  5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3'
miRNA:   3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 9965 0.69 0.435771
Target:  5'- cGGCCGcccccaccucGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC----------UGUag--CUCCGCGUCaaCGUCu -5'
26476 5' -55.8 NC_005357.1 + 18758 0.69 0.435771
Target:  5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3'
miRNA:   3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5'
26476 5' -55.8 NC_005357.1 + 39161 0.69 0.435771
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26476 5' -55.8 NC_005357.1 + 1329 0.68 0.455653
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26476 5' -55.8 NC_005357.1 + 34254 0.68 0.476014
Target:  5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3'
miRNA:   3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 16878 0.68 0.476014
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.