miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 5' -55.8 NC_005357.1 + 23560 0.78 0.111117
Target:  5'- cGGCCGACAUCGccggcAGGUGCGG--GCGGGg -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGUCaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 829 0.66 0.616925
Target:  5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3'
miRNA:   3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 36352 0.66 0.594618
Target:  5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3'
miRNA:   3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5'
26476 5' -55.8 NC_005357.1 + 17449 0.66 0.583509
Target:  5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3'
miRNA:   3'- cCGGcUGUAGCUCCGcGUCaACGucu -5'
26476 5' -55.8 NC_005357.1 + 8127 0.66 0.583509
Target:  5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 19634 0.66 0.583509
Target:  5'- gGGCCgcGACAUCGGccaGCGUcgGGUUGguGGu -3'
miRNA:   3'- -CCGG--CUGUAGCUc--CGCG--UCAACguCU- -5'
26476 5' -55.8 NC_005357.1 + 6371 0.67 0.518021
Target:  5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3'
miRNA:   3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5'
26476 5' -55.8 NC_005357.1 + 29263 0.68 0.507372
Target:  5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3'
miRNA:   3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 16595 0.68 0.485324
Target:  5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3'
miRNA:   3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5'
26476 5' -55.8 NC_005357.1 + 1329 0.68 0.455653
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26476 5' -55.8 NC_005357.1 + 13311 0.75 0.1842
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 4172 0.74 0.222648
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 11600 0.71 0.327914
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 35179 0.7 0.352937
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 2436 0.7 0.361573
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26476 5' -55.8 NC_005357.1 + 39161 0.69 0.435771
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26476 5' -55.8 NC_005357.1 + 19164 0.66 0.632577
Target:  5'- cGCCGACAccgaccugaccaugcUguuccccagCGAGGCGCGGUcGguGGc -3'
miRNA:   3'- cCGGCUGU---------------A---------GCUCCGCGUCAaCguCU- -5'
26476 5' -55.8 NC_005357.1 + 7817 0.77 0.139481
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26476 5' -55.8 NC_005357.1 + 35191 0.75 0.18931
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 37645 0.71 0.31987
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.