miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 5' -55.8 NC_005357.1 + 33246 0.7 0.370355
Target:  5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3'
miRNA:   3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5'
26476 5' -55.8 NC_005357.1 + 17648 0.66 0.583509
Target:  5'- cGCgGGCAUCGAGGaCGacccGUgGCAGGu -3'
miRNA:   3'- cCGgCUGUAGCUCC-GCgu--CAaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 26678 0.66 0.583509
Target:  5'- uGG-CGGCAaCGAGGUGCGGUaUGUcGAg -3'
miRNA:   3'- -CCgGCUGUaGCUCCGCGUCA-ACGuCU- -5'
26476 5' -55.8 NC_005357.1 + 19164 0.66 0.632577
Target:  5'- cGCCGACAccgaccugaccaugcUguuccccagCGAGGCGCGGUcGguGGc -3'
miRNA:   3'- cCGGCUGU---------------A---------GCUCCGCGUCAaCguCU- -5'
26476 5' -55.8 NC_005357.1 + 18758 0.69 0.435771
Target:  5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3'
miRNA:   3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5'
26476 5' -55.8 NC_005357.1 + 29279 1.11 0.000452
Target:  5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3'
miRNA:   3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 7817 0.77 0.139481
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26476 5' -55.8 NC_005357.1 + 35191 0.75 0.18931
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 37645 0.71 0.31987
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 2774 0.67 0.572441
Target:  5'- uGCCGACAccUCGAcguuGCGCAGgUGCGc- -3'
miRNA:   3'- cCGGCUGU--AGCUc---CGCGUCaACGUcu -5'
26476 5' -55.8 NC_005357.1 + 10293 0.67 0.514817
Target:  5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3'
miRNA:   3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5'
26476 5' -55.8 NC_005357.1 + 22498 0.68 0.507372
Target:  5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3'
miRNA:   3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5'
26476 5' -55.8 NC_005357.1 + 24163 0.69 0.416398
Target:  5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3'
miRNA:   3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 18264 0.67 0.518021
Target:  5'- cGCCGAagcgcgcagcCGUCGAGGCGCuGggcCAGGc -3'
miRNA:   3'- cCGGCU----------GUAGCUCCGCGuCaacGUCU- -5'
26476 5' -55.8 NC_005357.1 + 28900 0.69 0.416398
Target:  5'- cGGCCGACAguucGGCGCGGacgGCAa- -3'
miRNA:   3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5'
26476 5' -55.8 NC_005357.1 + 34254 0.68 0.476014
Target:  5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3'
miRNA:   3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 33447 0.67 0.528757
Target:  5'- cGCgCGGCGaggaaaUCGAGGCGCuuaccgacgUGCGGAu -3'
miRNA:   3'- cCG-GCUGU------AGCUCCGCGuca------ACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 17692 0.66 0.583509
Target:  5'- gGGUCGagGCcgCGcAGGCGCGGUggaaGCGGc -3'
miRNA:   3'- -CCGGC--UGuaGC-UCCGCGUCAa---CGUCu -5'
26476 5' -55.8 NC_005357.1 + 9965 0.69 0.435771
Target:  5'- cGGCCGcccccaccucGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC----------UGUag--CUCCGCGUCaaCGUCu -5'
26476 5' -55.8 NC_005357.1 + 16878 0.68 0.476014
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.