miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26476 5' -55.8 NC_005357.1 + 829 0.66 0.616925
Target:  5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3'
miRNA:   3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5'
26476 5' -55.8 NC_005357.1 + 1329 0.68 0.455653
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26476 5' -55.8 NC_005357.1 + 2365 0.66 0.628104
Target:  5'- gGGCaaaCGGCAacgguUCGAGGCGCAcGgcaugGCGGu -3'
miRNA:   3'- -CCG---GCUGU-----AGCUCCGCGU-Caa---CGUCu -5'
26476 5' -55.8 NC_005357.1 + 2436 0.7 0.361573
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26476 5' -55.8 NC_005357.1 + 2774 0.67 0.572441
Target:  5'- uGCCGACAccUCGAcguuGCGCAGgUGCGc- -3'
miRNA:   3'- cCGGCUGU--AGCUc---CGCGUCaACGUcu -5'
26476 5' -55.8 NC_005357.1 + 4172 0.74 0.222648
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 5251 0.66 0.628104
Target:  5'- cGGCCGGCAggUCGGGGUcgGCAa-UGCGu- -3'
miRNA:   3'- -CCGGCUGU--AGCUCCG--CGUcaACGUcu -5'
26476 5' -55.8 NC_005357.1 + 5323 0.66 0.628104
Target:  5'- aGGCCGcgaGCA-CGuGGCGCAGcaugGCAu- -3'
miRNA:   3'- -CCGGC---UGUaGCuCCGCGUCaa--CGUcu -5'
26476 5' -55.8 NC_005357.1 + 6371 0.67 0.518021
Target:  5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3'
miRNA:   3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5'
26476 5' -55.8 NC_005357.1 + 7817 0.77 0.139481
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26476 5' -55.8 NC_005357.1 + 8127 0.66 0.583509
Target:  5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 9965 0.69 0.435771
Target:  5'- cGGCCGcccccaccucGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC----------UGUag--CUCCGCGUCaaCGUCu -5'
26476 5' -55.8 NC_005357.1 + 10293 0.67 0.514817
Target:  5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3'
miRNA:   3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5'
26476 5' -55.8 NC_005357.1 + 11600 0.71 0.327914
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 13311 0.75 0.1842
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26476 5' -55.8 NC_005357.1 + 16595 0.68 0.485324
Target:  5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3'
miRNA:   3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5'
26476 5' -55.8 NC_005357.1 + 16878 0.68 0.476014
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5'
26476 5' -55.8 NC_005357.1 + 17449 0.66 0.583509
Target:  5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3'
miRNA:   3'- cCGGcUGUAGCUCCGcGUCaACGucu -5'
26476 5' -55.8 NC_005357.1 + 17648 0.66 0.583509
Target:  5'- cGCgGGCAUCGAGGaCGacccGUgGCAGGu -3'
miRNA:   3'- cCGgCUGUAGCUCC-GCgu--CAaCGUCU- -5'
26476 5' -55.8 NC_005357.1 + 17692 0.66 0.583509
Target:  5'- gGGUCGagGCcgCGcAGGCGCGGUggaaGCGGc -3'
miRNA:   3'- -CCGGC--UGuaGC-UCCGCGUCAa---CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.