Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26476 | 5' | -55.8 | NC_005357.1 | + | 41910 | 0.66 | 0.618042 |
Target: 5'- cGGCCGACAgaacCGccugcaagccgccgcGGCGCAGUaugcUGCcGAg -3' miRNA: 3'- -CCGGCUGUa---GCu--------------CCGCGUCA----ACGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 41609 | 0.66 | 0.583509 |
Target: 5'- uGGCCGACGuUCGgcaagggcuGGGCGCGGc-GCGu- -3' miRNA: 3'- -CCGGCUGU-AGC---------UCCGCGUCaaCGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 39161 | 0.69 | 0.435771 |
Target: 5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3' miRNA: 3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 37645 | 0.71 | 0.31987 |
Target: 5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3' miRNA: 3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 36352 | 0.66 | 0.594618 |
Target: 5'- cGCuCGACGacuUCGAGGCGguGUgaugaGCAc- -3' miRNA: 3'- cCG-GCUGU---AGCUCCGCguCAa----CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35755 | 0.66 | 0.594618 |
Target: 5'- cGGCCcugaACAUCGGcguGGCGCAGaccaugagcGCGGAc -3' miRNA: 3'- -CCGGc---UGUAGCU---CCGCGUCaa-------CGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35191 | 0.75 | 0.18931 |
Target: 5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3' miRNA: 3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 35179 | 0.7 | 0.352937 |
Target: 5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3' miRNA: 3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 34254 | 0.68 | 0.476014 |
Target: 5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3' miRNA: 3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 33447 | 0.67 | 0.528757 |
Target: 5'- cGCgCGGCGaggaaaUCGAGGCGCuuaccgacgUGCGGAu -3' miRNA: 3'- cCG-GCUGU------AGCUCCGCGuca------ACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 33246 | 0.7 | 0.370355 |
Target: 5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3' miRNA: 3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 31676 | 0.66 | 0.605759 |
Target: 5'- gGGCCGAaGUCGAGcGCGCccuuGgcgaGCAGc -3' miRNA: 3'- -CCGGCUgUAGCUC-CGCGu---Caa--CGUCu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 31627 | 0.66 | 0.583509 |
Target: 5'- aGCCG-CGcCGAGGCGCAGcaguacaUGCAa- -3' miRNA: 3'- cCGGCuGUaGCUCCGCGUCa------ACGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 29279 | 1.11 | 0.000452 |
Target: 5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3' miRNA: 3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 29263 | 0.68 | 0.507372 |
Target: 5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3' miRNA: 3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 28900 | 0.69 | 0.416398 |
Target: 5'- cGGCCGACAguucGGCGCGGacgGCAa- -3' miRNA: 3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 27719 | 0.7 | 0.352937 |
Target: 5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3' miRNA: 3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 27492 | 0.66 | 0.628104 |
Target: 5'- cGCCGA-GUUGGGcGCGCAGUcgGCAc- -3' miRNA: 3'- cCGGCUgUAGCUC-CGCGUCAa-CGUcu -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 26678 | 0.66 | 0.583509 |
Target: 5'- uGG-CGGCAaCGAGGUGCGGUaUGUcGAg -3' miRNA: 3'- -CCgGCUGUaGCUCCGCGUCA-ACGuCU- -5' |
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26476 | 5' | -55.8 | NC_005357.1 | + | 24163 | 0.69 | 0.416398 |
Target: 5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3' miRNA: 3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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