miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 20308 0.67 0.379353
Target:  5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3'
miRNA:   3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24486 0.67 0.379353
Target:  5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3'
miRNA:   3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23003 0.67 0.353663
Target:  5'- cGCCUG-GUCgGCCUGCugcuGCGCCuGCUg -3'
miRNA:   3'- uCGGAUgCGG-CGGAUGu---UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 25755 0.67 0.353663
Target:  5'- cGCUgggcGCGCUGCUgggcggcgGCAACGauGGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGGa-------UGUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 20611 0.67 0.345377
Target:  5'- cGCCaggcgGCGUCGCagguCggUGUCGGCCu -3'
miRNA:   3'- uCGGa----UGCGGCGgau-GuuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23380 0.67 0.345377
Target:  5'- cGCUgaucgACGCCGCCgGCGGcCGCUaccagGGCUa -3'
miRNA:   3'- uCGGa----UGCGGCGGaUGUU-GCGG-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 16289 0.67 0.345377
Target:  5'- gAGCCgcUGCGCCaaaucuGCCgcgACGaacacAUGCCGGCa -3'
miRNA:   3'- -UCGG--AUGCGG------CGGa--UGU-----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 16752 0.67 0.345377
Target:  5'- uGCCgaaaucCGCCGgCUgaugacguacAUGACGCCGGCa -3'
miRNA:   3'- uCGGau----GCGGCgGA----------UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 13021 0.67 0.369789
Target:  5'- gGGCaacGCGCCcaagauucugcugGCCUACcGCGCCGaGUCc -3'
miRNA:   3'- -UCGga-UGCGG-------------CGGAUGuUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 32277 0.67 0.365497
Target:  5'- uGGCUgcUGaCCGCCUuccagaagaaaggagGCGugGCCGGUa -3'
miRNA:   3'- -UCGGauGC-GGCGGA---------------UGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 30121 0.67 0.353663
Target:  5'- gAGCaacgaauucgACGCCGCCguagccgGC-ACGCUgGGCCa -3'
miRNA:   3'- -UCGga--------UGCGGCGGa------UGuUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 37740 0.67 0.379353
Target:  5'- cGGCCauucuCGCCGCgCUAUccggcGCGCUGGUg -3'
miRNA:   3'- -UCGGau---GCGGCG-GAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 9818 0.67 0.379353
Target:  5'- cGGCgU-CGCgGCCcuUGACGCgGGCCa -3'
miRNA:   3'- -UCGgAuGCGgCGGauGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1180 0.67 0.375856
Target:  5'- cAGCCguaucGCGCUGCCgugaauuucuACGCCGucGCCu -3'
miRNA:   3'- -UCGGa----UGCGGCGGaugu------UGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 32609 0.67 0.362088
Target:  5'- uGGCCcGCGUCaaggGCC-GCGACGCCgcGGUCg -3'
miRNA:   3'- -UCGGaUGCGG----CGGaUGUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 16694 0.67 0.345377
Target:  5'- cAGCgUGCuGCCGCCggugaggACGACGaCCccGCCg -3'
miRNA:   3'- -UCGgAUG-CGGCGGa------UGUUGC-GGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 12413 0.67 0.337231
Target:  5'- cGGCCUugAUGCCGuCCUugGugGCGCUGucgaugucGCCg -3'
miRNA:   3'- -UCGGA--UGCGGC-GGAugU--UGCGGC--------CGG- -5'
26477 3' -59.7 NC_005357.1 + 28183 0.67 0.337231
Target:  5'- uGCCcACGCCcaGCaggUGCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGg--AUGUUGCGG-----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 4759 0.67 0.343737
Target:  5'- cGGCCgcgauguucucgGCGuUCGCCcACAcugcgcccagcACGCCGGCUg -3'
miRNA:   3'- -UCGGa-----------UGC-GGCGGaUGU-----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28023 0.67 0.345377
Target:  5'- aAGCCgaucaugucgGCGUCGCCgaagaAC-ACGUCGGCg -3'
miRNA:   3'- -UCGGa---------UGCGGCGGa----UGuUGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.