miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 4354 0.66 0.3873
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31533 0.66 0.400786
Target:  5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3'
miRNA:   3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 37427 0.66 0.424857
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26477 3' -59.7 NC_005357.1 + 13134 0.66 0.423915
Target:  5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3'
miRNA:   3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12921 0.66 0.406263
Target:  5'- cAGCCUGuCGUCGCCauugACGuggacacgaccgACGCggaacUGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa---UGU------------UGCG-----GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10659 0.66 0.396257
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8366 0.66 0.388189
Target:  5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3'
miRNA:   3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 620 0.66 0.415496
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32454 0.66 0.406263
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 32609 0.67 0.362088
Target:  5'- uGGCCcGCGUCaaggGCC-GCGACGCCgcGGUCg -3'
miRNA:   3'- -UCGGaUGCGG----CGGaUGUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 17873 0.67 0.337231
Target:  5'- cGGCCUcgccauCGCCGCgCUGCGcgaccACG-CGGUCa -3'
miRNA:   3'- -UCGGAu-----GCGGCG-GAUGU-----UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14271 0.67 0.337231
Target:  5'- uGGCCUGCugcaccauGCUGUCgGCGAUGC-GGCCc -3'
miRNA:   3'- -UCGGAUG--------CGGCGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 19742 0.67 0.379353
Target:  5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3'
miRNA:   3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 12413 0.67 0.337231
Target:  5'- cGGCCUugAUGCCGuCCUugGugGCGCUGucgaugucGCCg -3'
miRNA:   3'- -UCGGA--UGCGGC-GGAugU--UGCGGC--------CGG- -5'
26477 3' -59.7 NC_005357.1 + 3884 0.67 0.379353
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 24486 0.67 0.379353
Target:  5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3'
miRNA:   3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 20308 0.67 0.379353
Target:  5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3'
miRNA:   3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5560 0.67 0.379353
Target:  5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3'
miRNA:   3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25324 0.67 0.379353
Target:  5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3'
miRNA:   3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31901 0.67 0.379353
Target:  5'- cGCCaucgAgGCCgaguGCCUGCGGCGUuucgaGGCCu -3'
miRNA:   3'- uCGGa---UgCGG----CGGAUGUUGCGg----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.