Results 21 - 40 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 40408 | 0.75 | 0.102791 |
Target: 5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3' miRNA: 3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4630 | 0.75 | 0.102791 |
Target: 5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3' miRNA: 3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 5175 | 0.75 | 0.105122 |
Target: 5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3' miRNA: 3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36052 | 0.75 | 0.105712 |
Target: 5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3' miRNA: 3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 593 | 0.75 | 0.105712 |
Target: 5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3' miRNA: 3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 38556 | 0.75 | 0.108711 |
Target: 5'- cGGCa-GCGCgGCCUACAGCGaCGGCg -3' miRNA: 3'- -UCGgaUGCGgCGGAUGUUGCgGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23942 | 0.75 | 0.108711 |
Target: 5'- uGGUCagGCGCCGCCcgGCGAgGUCGGCa -3' miRNA: 3'- -UCGGa-UGCGGCGGa-UGUUgCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37585 | 0.75 | 0.109933 |
Target: 5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3' miRNA: 3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 25853 | 0.74 | 0.113044 |
Target: 5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3' miRNA: 3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 17099 | 0.74 | 0.113993 |
Target: 5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3' miRNA: 3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 20190 | 0.74 | 0.11495 |
Target: 5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3' miRNA: 3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8386 | 0.74 | 0.11495 |
Target: 5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3' miRNA: 3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 30997 | 0.74 | 0.11495 |
Target: 5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3' miRNA: 3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 29032 | 0.74 | 0.11495 |
Target: 5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3' miRNA: 3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 29213 | 0.74 | 0.116237 |
Target: 5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3' miRNA: 3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 21811 | 0.74 | 0.118193 |
Target: 5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3' miRNA: 3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 34714 | 0.74 | 0.118193 |
Target: 5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3' miRNA: 3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 730 | 0.74 | 0.121521 |
Target: 5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3' miRNA: 3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 21179 | 0.74 | 0.124936 |
Target: 5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3' miRNA: 3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14900 | 0.74 | 0.124936 |
Target: 5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3' miRNA: 3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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