miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 31533 0.66 0.400786
Target:  5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3'
miRNA:   3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 37910 0.66 0.39716
Target:  5'- uGGUCUGCGaugcgccaagCGCCUGUGGCGCCGcGCg -3'
miRNA:   3'- -UCGGAUGCg---------GCGGAUGUUGCGGC-CGg -5'
26477 3' -59.7 NC_005357.1 + 38623 0.66 0.39716
Target:  5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3'
miRNA:   3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36862 0.66 0.39716
Target:  5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3'
miRNA:   3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 6365 0.66 0.39716
Target:  5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3'
miRNA:   3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10659 0.66 0.396257
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8366 0.66 0.388189
Target:  5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3'
miRNA:   3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 42223 0.66 0.3873
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 4354 0.66 0.3873
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30208 0.67 0.382871
Target:  5'- uGCCggugUGCUGCgUcccgaccaggggcagGCAGCGCgGGCCg -3'
miRNA:   3'- uCGGau--GCGGCGgA---------------UGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14936 0.67 0.381989
Target:  5'- cGGCCgAgGCCGCCggcauccucgcguggUGCGuggcggcGCGCUGGCa -3'
miRNA:   3'- -UCGGaUgCGGCGG---------------AUGU-------UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 5298 0.67 0.379353
Target:  5'- cGGCC-ACGgCGUCgAUAuuuuccagguCGCCGGCCa -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUu---------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 31901 0.67 0.379353
Target:  5'- cGCCaucgAgGCCgaguGCCUGCGGCGUuucgaGGCCu -3'
miRNA:   3'- uCGGa---UgCGG----CGGAUGUUGCGg----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 9818 0.67 0.379353
Target:  5'- cGGCgU-CGCgGCCcuUGACGCgGGCCa -3'
miRNA:   3'- -UCGgAuGCGgCGGauGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36999 0.67 0.379353
Target:  5'- cGCCcACGCCGCCauccGCGCCGuggaGCg -3'
miRNA:   3'- uCGGaUGCGGCGGauguUGCGGC----CGg -5'
26477 3' -59.7 NC_005357.1 + 3884 0.67 0.379353
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 24486 0.67 0.379353
Target:  5'- uGGCCUGCGCCaggaaGUCguaGGgGCUGGCg -3'
miRNA:   3'- -UCGGAUGCGG-----CGGaugUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 36916 0.67 0.379353
Target:  5'- cGGCCgGCG-UGCCUACGACuuUGGCa -3'
miRNA:   3'- -UCGGaUGCgGCGGAUGUUGcgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 19742 0.67 0.379353
Target:  5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3'
miRNA:   3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 37740 0.67 0.379353
Target:  5'- cGGCCauucuCGCCGCgCUAUccggcGCGCUGGUg -3'
miRNA:   3'- -UCGGau---GCGGCG-GAUGu----UGCGGCCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.