miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 17997 0.67 0.379353
Target:  5'- aGGCCgcGCGCgGCaccgACAAaucggGCCGGCUg -3'
miRNA:   3'- -UCGGa-UGCGgCGga--UGUUg----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8218 0.67 0.379353
Target:  5'- cGGCCaguucgUGCGCgGCCgUGCccuCGUCGGCg -3'
miRNA:   3'- -UCGG------AUGCGgCGG-AUGuu-GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 9818 0.67 0.379353
Target:  5'- cGGCgU-CGCgGCCcuUGACGCgGGCCa -3'
miRNA:   3'- -UCGgAuGCGgCGGauGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36916 0.67 0.379353
Target:  5'- cGGCCgGCG-UGCCUACGACuuUGGCa -3'
miRNA:   3'- -UCGGaUGCgGCGGAUGUUGcgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 37740 0.67 0.379353
Target:  5'- cGGCCauucuCGCCGCgCUAUccggcGCGCUGGUg -3'
miRNA:   3'- -UCGGau---GCGGCG-GAUGu----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 1180 0.67 0.375856
Target:  5'- cAGCCguaucGCGCUGCCgugaauuucuACGCCGucGCCu -3'
miRNA:   3'- -UCGGa----UGCGGCGGaugu------UGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 1875 0.67 0.370652
Target:  5'- cAGCC--CGUgGCCg---GCGCUGGCCg -3'
miRNA:   3'- -UCGGauGCGgCGGauguUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 35388 0.67 0.370652
Target:  5'- aGGCCaUGCGCCuG-CUGCAACaGgCGGCa -3'
miRNA:   3'- -UCGG-AUGCGG-CgGAUGUUG-CgGCCGg -5'
26477 3' -59.7 NC_005357.1 + 26832 0.67 0.370652
Target:  5'- cAGgCUGCGCCGCCc-CGAUggaGCgGGCg -3'
miRNA:   3'- -UCgGAUGCGGCGGauGUUG---CGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 34876 0.67 0.370652
Target:  5'- aAGCCggugGCGCCGCggAUcgagcACGCC-GCCg -3'
miRNA:   3'- -UCGGa---UGCGGCGgaUGu----UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 13021 0.67 0.369789
Target:  5'- gGGCaacGCGCCcaagauucugcugGCCUACcGCGCCGaGUCc -3'
miRNA:   3'- -UCGga-UGCGG-------------CGGAUGuUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 32277 0.67 0.365497
Target:  5'- uGGCUgcUGaCCGCCUuccagaagaaaggagGCGugGCCGGUa -3'
miRNA:   3'- -UCGGauGC-GGCGGA---------------UGUugCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 32609 0.67 0.362088
Target:  5'- uGGCCcGCGUCaaggGCC-GCGACGCCgcGGUCg -3'
miRNA:   3'- -UCGGaUGCGG----CGGaUGUUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 24742 0.67 0.359546
Target:  5'- cGCCUGCGCgGCCUcgacccaugcugucGgAAUGaCCuGCCa -3'
miRNA:   3'- uCGGAUGCGgCGGA--------------UgUUGC-GGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 5993 0.67 0.358701
Target:  5'- cGUCUGCGUCGCUcaaaauggcgacgACuuCGCCGGUg -3'
miRNA:   3'- uCGGAUGCGGCGGa------------UGuuGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 23003 0.67 0.353663
Target:  5'- cGCCUG-GUCgGCCUGCugcuGCGCCuGCUg -3'
miRNA:   3'- uCGGAUgCGG-CGGAUGu---UGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 25755 0.67 0.353663
Target:  5'- cGCUgggcGCGCUGCUgggcggcgGCAACGauGGCCg -3'
miRNA:   3'- uCGGa---UGCGGCGGa-------UGUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30121 0.67 0.353663
Target:  5'- gAGCaacgaauucgACGCCGCCguagccgGC-ACGCUgGGCCa -3'
miRNA:   3'- -UCGga--------UGCGGCGGa------UGuUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 16289 0.67 0.345377
Target:  5'- gAGCCgcUGCGCCaaaucuGCCgcgACGaacacAUGCCGGCa -3'
miRNA:   3'- -UCGG--AUGCGG------CGGa--UGU-----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 6147 0.67 0.345377
Target:  5'- cAGCacccacuCGCCGCCgucaucuuccCAGCGCaGGCCg -3'
miRNA:   3'- -UCGgau----GCGGCGGau--------GUUGCGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.