miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 4354 0.66 0.3873
Target:  5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3'
miRNA:   3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4386 0.72 0.17339
Target:  5'- cAGCCagGCGCCGUC----GCGCCgGGCCu -3'
miRNA:   3'- -UCGGa-UGCGGCGGauguUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 4571 0.69 0.25045
Target:  5'- cGCCgagGCGCUGCUcGguGCGCCaGGCg -3'
miRNA:   3'- uCGGa--UGCGGCGGaUguUGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 4630 0.75 0.102791
Target:  5'- uGGCCcGCGCUGCC-GCAGgGUCGGCa -3'
miRNA:   3'- -UCGGaUGCGGCGGaUGUUgCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 4759 0.67 0.343737
Target:  5'- cGGCCgcgauguucucgGCGuUCGCCcACAcugcgcccagcACGCCGGCUg -3'
miRNA:   3'- -UCGGa-----------UGC-GGCGGaUGU-----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4867 0.66 0.424857
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5121 0.73 0.135722
Target:  5'- cGGCUgGCGCCGUugaaCUGCAACGUgccgcgcaggCGGCCg -3'
miRNA:   3'- -UCGGaUGCGGCG----GAUGUUGCG----------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5175 0.75 0.105122
Target:  5'- uGCCUGCcaCCGCCUGCAcgucgucgauauUGCCGGCUa -3'
miRNA:   3'- uCGGAUGc-GGCGGAUGUu-----------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5298 0.67 0.379353
Target:  5'- cGGCC-ACGgCGUCgAUAuuuuccagguCGCCGGCCa -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUu---------GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5353 0.71 0.182941
Target:  5'- cGCgCUGCgugGCCGCCUGCAccGCGCCcagGGUUa -3'
miRNA:   3'- uCG-GAUG---CGGCGGAUGU--UGCGG---CCGG- -5'
26477 3' -59.7 NC_005357.1 + 5502 0.69 0.284163
Target:  5'- cGGCg-AUGCUGCCaaagucguaggAC-ACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCGGa----------UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5560 0.67 0.379353
Target:  5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3'
miRNA:   3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 5993 0.67 0.358701
Target:  5'- cGUCUGCGUCGCUcaaaauggcgacgACuuCGCCGGUg -3'
miRNA:   3'- uCGGAUGCGGCGGa------------UGuuGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 6147 0.67 0.345377
Target:  5'- cAGCacccacuCGCCGCCgucaucuuccCAGCGCaGGCCg -3'
miRNA:   3'- -UCGgau----GCGGCGGau--------GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 6231 0.71 0.19814
Target:  5'- uGCCUucgGCCaggGCCUGC-ACGCCGGUa -3'
miRNA:   3'- uCGGAug-CGG---CGGAUGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 6365 0.66 0.39716
Target:  5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3'
miRNA:   3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 6371 0.68 0.329227
Target:  5'- cGGCCcACGUCGgCaaucagGCGcAgGCCGGCCg -3'
miRNA:   3'- -UCGGaUGCGGCgGa-----UGU-UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 6618 0.68 0.30606
Target:  5'- uGGCgUAgucCGCCGCCaGCuucgcGCGCUuGGCCg -3'
miRNA:   3'- -UCGgAU---GCGGCGGaUGu----UGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 7030 0.68 0.291321
Target:  5'- cGUUUGUGCCGCCUguuGCAgcagGCGCaUGGCCu -3'
miRNA:   3'- uCGGAUGCGGCGGA---UGU----UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7223 0.77 0.067192
Target:  5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3'
miRNA:   3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.