miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 165 0.67 0.345377
Target:  5'- uGCCcaaGCUGCCgcgcGCAgaAUGCCGGCg -3'
miRNA:   3'- uCGGaugCGGCGGa---UGU--UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 593 0.75 0.105712
Target:  5'- gAGUUUGaugGCCGCCUGCGG-GUCGGCCa -3'
miRNA:   3'- -UCGGAUg--CGGCGGAUGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 620 0.66 0.415496
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26477 3' -59.7 NC_005357.1 + 670 0.87 0.012402
Target:  5'- uAGCCaccAgGCCGCCUACGgcgGCGCCGGCCg -3'
miRNA:   3'- -UCGGa--UgCGGCGGAUGU---UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 730 0.74 0.121521
Target:  5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3'
miRNA:   3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 813 0.71 0.187889
Target:  5'- cGCC-GCGCCcaGCCcuUGCcgAACGUCGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGG--AUG--UUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 980 0.69 0.263523
Target:  5'- cAGCCacUugGCCGCCUgGCggUGCCguGGUUc -3'
miRNA:   3'- -UCGG--AugCGGCGGA-UGuuGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 1096 0.69 0.284163
Target:  5'- uGCCUugGCCGUgUcgcgcgGCAugucGCGCauCGGCCc -3'
miRNA:   3'- uCGGAugCGGCGgA------UGU----UGCG--GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1179 0.7 0.23185
Target:  5'- uAGUCU-CGCCGCCg---GgGUCGGCCg -3'
miRNA:   3'- -UCGGAuGCGGCGGauguUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 1180 0.67 0.375856
Target:  5'- cAGCCguaucGCGCUGCCgugaauuucuACGCCGucGCCu -3'
miRNA:   3'- -UCGGa----UGCGGCGGaugu------UGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 1766 0.68 0.30606
Target:  5'- cGGCCUGCGCCug--GC-GCGUCgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcggaUGuUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 1875 0.67 0.370652
Target:  5'- cAGCC--CGUgGCCg---GCGCUGGCCg -3'
miRNA:   3'- -UCGGauGCGgCGGauguUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 2141 0.72 0.164286
Target:  5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3'
miRNA:   3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5'
26477 3' -59.7 NC_005357.1 + 3266 0.66 0.409941
Target:  5'- cAGCUUccGCGCCagauagucggcccguGCCUuuGCGAUGCCGGa- -3'
miRNA:   3'- -UCGGA--UGCGG---------------CGGA--UGUUGCGGCCgg -5'
26477 3' -59.7 NC_005357.1 + 3539 0.72 0.168783
Target:  5'- uGCCguuccagGCGCCGCCgaauagcGCAGCaGCgGGCUg -3'
miRNA:   3'- uCGGa------UGCGGCGGa------UGUUG-CGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 3884 0.67 0.379353
Target:  5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3'
miRNA:   3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 3992 0.68 0.321363
Target:  5'- cAGCagauagAUGuCCGCCcaaaAC-GCGCCGGCCa -3'
miRNA:   3'- -UCGga----UGC-GGCGGa---UGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4117 0.7 0.225913
Target:  5'- cAGCCUGCGCUGCagcguUGCuuC-CCGGCg -3'
miRNA:   3'- -UCGGAUGCGGCGg----AUGuuGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 4177 0.69 0.270264
Target:  5'- uAGCCg--GCCGCCUcgaugGCGggcAUGuuGGCCg -3'
miRNA:   3'- -UCGGaugCGGCGGA-----UGU---UGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 4254 0.69 0.284163
Target:  5'- uAGUCggUGCCgGCCguCAGCGCCGGCa -3'
miRNA:   3'- -UCGGauGCGG-CGGauGUUGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.