miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 29114 1.1 0.000216
Target:  5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3'
miRNA:   3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 670 0.87 0.012402
Target:  5'- uAGCCaccAgGCCGCCUACGgcgGCGCCGGCCg -3'
miRNA:   3'- -UCGGa--UgCGGCGGAUGU---UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11146 0.82 0.032624
Target:  5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3'
miRNA:   3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33852 0.79 0.051884
Target:  5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3'
miRNA:   3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 34674 0.79 0.051884
Target:  5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3'
miRNA:   3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14996 0.78 0.059914
Target:  5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3'
miRNA:   3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 27557 0.78 0.060955
Target:  5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3'
miRNA:   3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 27824 0.78 0.063452
Target:  5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3'
miRNA:   3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7223 0.77 0.067192
Target:  5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3'
miRNA:   3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 23417 0.77 0.067192
Target:  5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3'
miRNA:   3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14841 0.77 0.071143
Target:  5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3'
miRNA:   3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 40196 0.77 0.071143
Target:  5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3'
miRNA:   3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 25128 0.77 0.071143
Target:  5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3'
miRNA:   3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18461 0.77 0.077492
Target:  5'- cGGUC-GCGgCGCCgGCGGCGUCGGCCg -3'
miRNA:   3'- -UCGGaUGCgGCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 41324 0.76 0.082022
Target:  5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3'
miRNA:   3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 11578 0.76 0.089294
Target:  5'- aAGCC-AUGCCGCCcAgGGcCGCCGGCUg -3'
miRNA:   3'- -UCGGaUGCGGCGGaUgUU-GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24758 0.76 0.091851
Target:  5'- cGCCUACGCCcaGCCcgcCGACGCCaucaagaucguGGCCg -3'
miRNA:   3'- uCGGAUGCGG--CGGau-GUUGCGG-----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 15176 0.75 0.094478
Target:  5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3'
miRNA:   3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 34290 0.75 0.097176
Target:  5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3'
miRNA:   3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 11263 0.75 0.099946
Target:  5'- gGGUUUGCGCUGCggcgCUGgGACGCuCGGCCa -3'
miRNA:   3'- -UCGGAUGCGGCG----GAUgUUGCG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.