Results 1 - 20 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26477 | 3' | -59.7 | NC_005357.1 | + | 14228 | 0.65 | 0.432436 |
Target: 5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3' miRNA: 3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 14819 | 0.66 | 0.406263 |
Target: 5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3' miRNA: 3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 36862 | 0.66 | 0.39716 |
Target: 5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3' miRNA: 3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 22236 | 0.66 | 0.41364 |
Target: 5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3' miRNA: 3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37427 | 0.66 | 0.424857 |
Target: 5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3' miRNA: 3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4867 | 0.66 | 0.424857 |
Target: 5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3' miRNA: 3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37343 | 0.66 | 0.424857 |
Target: 5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3' miRNA: 3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 620 | 0.66 | 0.415496 |
Target: 5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3' miRNA: 3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 37910 | 0.66 | 0.39716 |
Target: 5'- uGGUCUGCGaugcgccaagCGCCUGUGGCGCCGcGCg -3' miRNA: 3'- -UCGGAUGCg---------GCGGAUGUUGCGGC-CGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 27506 | 0.66 | 0.415496 |
Target: 5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3' miRNA: 3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 31533 | 0.66 | 0.400786 |
Target: 5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3' miRNA: 3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 6365 | 0.66 | 0.39716 |
Target: 5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3' miRNA: 3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 4354 | 0.66 | 0.3873 |
Target: 5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3' miRNA: 3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 42223 | 0.66 | 0.3873 |
Target: 5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3' miRNA: 3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 13134 | 0.66 | 0.423915 |
Target: 5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3' miRNA: 3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 23773 | 0.66 | 0.419226 |
Target: 5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3' miRNA: 3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 38623 | 0.66 | 0.39716 |
Target: 5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3' miRNA: 3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 8419 | 0.66 | 0.415496 |
Target: 5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3' miRNA: 3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 32454 | 0.66 | 0.406263 |
Target: 5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3' miRNA: 3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5' |
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26477 | 3' | -59.7 | NC_005357.1 | + | 10659 | 0.66 | 0.396257 |
Target: 5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3' miRNA: 3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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