miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 42223 0.66 0.3873
Target:  5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3'
miRNA:   3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 42144 0.67 0.337231
Target:  5'- cGCCUucCGgCGCagCUACugGACGCCGuGCCu -3'
miRNA:   3'- uCGGAu-GCgGCG--GAUG--UUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 42078 0.66 0.406263
Target:  5'- gGGCCUgGCGgaCgGCCUgcugcGCGACGCCaccGCCa -3'
miRNA:   3'- -UCGGA-UGC--GgCGGA-----UGUUGCGGc--CGG- -5'
26477 3' -59.7 NC_005357.1 + 41923 0.7 0.214427
Target:  5'- cGCCUGCaaGCCGCC-GCGGCGCaguaugcuGCCg -3'
miRNA:   3'- uCGGAUG--CGGCGGaUGUUGCGgc------CGG- -5'
26477 3' -59.7 NC_005357.1 + 41805 0.73 0.143382
Target:  5'- cGCCggACGCCGUgUccACGGCGCUgcuGGCCg -3'
miRNA:   3'- uCGGa-UGCGGCGgA--UGUUGCGG---CCGG- -5'
26477 3' -59.7 NC_005357.1 + 41751 0.74 0.124936
Target:  5'- cGGCCgGCGCCGCCguagGCGGC-CUGGUg -3'
miRNA:   3'- -UCGGaUGCGGCGGa---UGUUGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 41412 0.66 0.424857
Target:  5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3'
miRNA:   3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 41379 0.69 0.277144
Target:  5'- cGCCgguuCGCgGCgacaUGCugcCGCCGGCCg -3'
miRNA:   3'- uCGGau--GCGgCGg---AUGuu-GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 41324 0.76 0.082022
Target:  5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3'
miRNA:   3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 40961 0.72 0.167423
Target:  5'- cGGCCUGCcaggagGCCGCCgACcGCGCCGucaagaagguguuuGCCa -3'
miRNA:   3'- -UCGGAUG------CGGCGGaUGuUGCGGC--------------CGG- -5'
26477 3' -59.7 NC_005357.1 + 40707 0.68 0.30606
Target:  5'- aGGaCUUggACGCCcucGCCgGC-ACGCCGGCCc -3'
miRNA:   3'- -UC-GGA--UGCGG---CGGaUGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40662 0.71 0.208874
Target:  5'- cGGCCcgACG-CGCCagGCGcAgGCCGGCCa -3'
miRNA:   3'- -UCGGa-UGCgGCGGa-UGU-UgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40541 0.72 0.168783
Target:  5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3'
miRNA:   3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40446 0.68 0.291321
Target:  5'- cGaCCU-CGCgCGCCUACAGCguGCCuucccccagGGCCg -3'
miRNA:   3'- uC-GGAuGCG-GCGGAUGUUG--CGG---------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 40408 0.75 0.102791
Target:  5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3'
miRNA:   3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 40196 0.77 0.071143
Target:  5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3'
miRNA:   3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 39975 0.74 0.12738
Target:  5'- cGCCUugugcaacaucgugGCGCCGaUCUuCGAgGCCGGCCu -3'
miRNA:   3'- uCGGA--------------UGCGGC-GGAuGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 39681 0.71 0.203445
Target:  5'- uGGUCggcACGCC-CgaGCAGCGCCgGGCCg -3'
miRNA:   3'- -UCGGa--UGCGGcGgaUGUUGCGG-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 39594 0.69 0.270264
Target:  5'- uGCUgGCGCCGCUgcGCGugGCCgcgagcaccuGGCCc -3'
miRNA:   3'- uCGGaUGCGGCGGa-UGUugCGG----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 38719 0.68 0.329227
Target:  5'- gAGCggaUGCGCCGCaugggGCAGCGCgucGCCg -3'
miRNA:   3'- -UCGg--AUGCGGCGga---UGUUGCGgc-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.