miRNA display CGI


Results 61 - 80 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 23380 0.67 0.345377
Target:  5'- cGCUgaucgACGCCGCCgGCGGcCGCUaccagGGCUa -3'
miRNA:   3'- uCGGa----UGCGGCGGaUGUU-GCGG-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 16694 0.67 0.345377
Target:  5'- cAGCgUGCuGCCGCCggugaggACGACGaCCccGCCg -3'
miRNA:   3'- -UCGgAUG-CGGCGGa------UGUUGC-GGc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 16289 0.67 0.345377
Target:  5'- gAGCCgcUGCGCCaaaucuGCCgcgACGaacacAUGCCGGCa -3'
miRNA:   3'- -UCGG--AUGCGG------CGGa--UGU-----UGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 28023 0.67 0.345377
Target:  5'- aAGCCgaucaugucgGCGUCGCCgaagaAC-ACGUCGGCg -3'
miRNA:   3'- -UCGGa---------UGCGGCGGa----UGuUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 16752 0.67 0.345377
Target:  5'- uGCCgaaaucCGCCGgCUgaugacguacAUGACGCCGGCa -3'
miRNA:   3'- uCGGau----GCGGCgGA----------UGUUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 6147 0.67 0.345377
Target:  5'- cAGCacccacuCGCCGCCgucaucuuccCAGCGCaGGCCg -3'
miRNA:   3'- -UCGgau----GCGGCGGau--------GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24032 0.67 0.345377
Target:  5'- cGCCgACgugGCCGCCacCGGCGCCaucggcaaGGCCa -3'
miRNA:   3'- uCGGaUG---CGGCGGauGUUGCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 4759 0.67 0.343737
Target:  5'- cGGCCgcgauguucucgGCGuUCGCCcACAcugcgcccagcACGCCGGCUg -3'
miRNA:   3'- -UCGGa-----------UGC-GGCGGaUGU-----------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 33519 0.67 0.337231
Target:  5'- aAGCCaucgagcGCGCCGCCgAUAGCGCCa--- -3'
miRNA:   3'- -UCGGa------UGCGGCGGaUGUUGCGGccgg -5'
26477 3' -59.7 NC_005357.1 + 42144 0.67 0.337231
Target:  5'- cGCCUucCGgCGCagCUACugGACGCCGuGCCu -3'
miRNA:   3'- uCGGAu-GCgGCG--GAUG--UUGCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 17873 0.67 0.337231
Target:  5'- cGGCCUcgccauCGCCGCgCUGCGcgaccACG-CGGUCa -3'
miRNA:   3'- -UCGGAu-----GCGGCG-GAUGU-----UGCgGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 28183 0.67 0.337231
Target:  5'- uGCCcACGCCcaGCaggUGCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- uCGGaUGCGG--CGg--AUGUUGCGG-----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 12413 0.67 0.337231
Target:  5'- cGGCCUugAUGCCGuCCUugGugGCGCUGucgaugucGCCg -3'
miRNA:   3'- -UCGGA--UGCGGC-GGAugU--UGCGGC--------CGG- -5'
26477 3' -59.7 NC_005357.1 + 14271 0.67 0.337231
Target:  5'- uGGCCUGCugcaccauGCUGUCgGCGAUGC-GGCCc -3'
miRNA:   3'- -UCGGAUG--------CGGCGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 18495 0.67 0.337231
Target:  5'- gGGCgUGCGCCugaccaucacGCCU---AUGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG----------CGGAuguUGCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 29853 0.67 0.337231
Target:  5'- cGGCUauuucauCGCCGC--GCAGCGCgaGGCCg -3'
miRNA:   3'- -UCGGau-----GCGGCGgaUGUUGCGg-CCGG- -5'
26477 3' -59.7 NC_005357.1 + 30423 0.67 0.337231
Target:  5'- cGGCC-GCGCUGCUggcCGACGUggaaaaGGCCa -3'
miRNA:   3'- -UCGGaUGCGGCGGau-GUUGCGg-----CCGG- -5'
26477 3' -59.7 NC_005357.1 + 23284 0.68 0.329227
Target:  5'- cGGCgUGCGCCacgaauGCCUGuuuGCgGCCGGCa -3'
miRNA:   3'- -UCGgAUGCGG------CGGAUgu-UG-CGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 38719 0.68 0.329227
Target:  5'- gAGCggaUGCGCCGCaugggGCAGCGCgucGCCg -3'
miRNA:   3'- -UCGg--AUGCGGCGga---UGUUGCGgc-CGG- -5'
26477 3' -59.7 NC_005357.1 + 6371 0.68 0.329227
Target:  5'- cGGCCcACGUCGgCaaucagGCGcAgGCCGGCCg -3'
miRNA:   3'- -UCGGaUGCGGCgGa-----UGU-UgCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.