miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 7242 0.69 0.25045
Target:  5'- cGGCCacugGCGCgGgCCgauguCGCCGGCCu -3'
miRNA:   3'- -UCGGa---UGCGgC-GGauguuGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 7343 0.69 0.270264
Target:  5'- uGGCCUugaGCGCgGCCU-CGACcUCGGCg -3'
miRNA:   3'- -UCGGA---UGCGgCGGAuGUUGcGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 7514 0.68 0.329227
Target:  5'- uGCCgaggaugGCGuuGUCUACcguGCGCuCGGCg -3'
miRNA:   3'- uCGGa------UGCggCGGAUGu--UGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 7706 0.72 0.17339
Target:  5'- cGGCCggcuUGCCGaugaaCUGCAGCGCacgcucggCGGCCg -3'
miRNA:   3'- -UCGGau--GCGGCg----GAUGUUGCG--------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8180 0.7 0.220106
Target:  5'- cGCCcggAUGCUGCCgGCGauuucaucGCGCaCGGCCu -3'
miRNA:   3'- uCGGa--UGCGGCGGaUGU--------UGCG-GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8218 0.67 0.379353
Target:  5'- cGGCCaguucgUGCGCgGCCgUGCccuCGUCGGCg -3'
miRNA:   3'- -UCGG------AUGCGgCGG-AUGuu-GCGGCCGg -5'
26477 3' -59.7 NC_005357.1 + 8287 0.69 0.270264
Target:  5'- gGGCC-ACGCUGCCgggGCAGUGCa-GCCa -3'
miRNA:   3'- -UCGGaUGCGGCGGa--UGUUGCGgcCGG- -5'
26477 3' -59.7 NC_005357.1 + 8366 0.66 0.388189
Target:  5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3'
miRNA:   3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5'
26477 3' -59.7 NC_005357.1 + 8386 0.74 0.11495
Target:  5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3'
miRNA:   3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8419 0.66 0.415496
Target:  5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3'
miRNA:   3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 8463 0.69 0.270264
Target:  5'- cGUCgAgGUgGCCUGCGAUGCCGcaGCCg -3'
miRNA:   3'- uCGGaUgCGgCGGAUGUUGCGGC--CGG- -5'
26477 3' -59.7 NC_005357.1 + 8622 0.68 0.321363
Target:  5'- cGCUUcucgGCCGCUgcggugGCGAgguCGCCGGCCu -3'
miRNA:   3'- uCGGAug--CGGCGGa-----UGUU---GCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8679 0.7 0.237917
Target:  5'- cGGCugCUGCGCCGCCcagguguGCGCCGcGCa -3'
miRNA:   3'- -UCG--GAUGCGGCGGaugu---UGCGGC-CGg -5'
26477 3' -59.7 NC_005357.1 + 8830 0.7 0.23185
Target:  5'- gGGUCgg-GCCaGCC-GCAACGCgGGCCa -3'
miRNA:   3'- -UCGGaugCGG-CGGaUGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 8960 0.69 0.25045
Target:  5'- uGGCCgugcCGCgauaGCCaGCGugGCCGuGCCg -3'
miRNA:   3'- -UCGGau--GCGg---CGGaUGUugCGGC-CGG- -5'
26477 3' -59.7 NC_005357.1 + 9168 0.68 0.292045
Target:  5'- gGGCCggcagcgacaacuugGCGCCGUC---GACGuuGGCCu -3'
miRNA:   3'- -UCGGa--------------UGCGGCGGaugUUGCggCCGG- -5'
26477 3' -59.7 NC_005357.1 + 9818 0.67 0.379353
Target:  5'- cGGCgU-CGCgGCCcuUGACGCgGGCCa -3'
miRNA:   3'- -UCGgAuGCGgCGGauGUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10072 0.68 0.29862
Target:  5'- gGGCCUcggcgGCGaCCGCagcgaccuggGCGgcgguugucgggACGCCGGCCu -3'
miRNA:   3'- -UCGGA-----UGC-GGCGga--------UGU------------UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10457 0.69 0.277144
Target:  5'- cGCCcuugGCGUCGCCcuggaagucgcGCAGCaCCGGCCc -3'
miRNA:   3'- uCGGa---UGCGGCGGa----------UGUUGcGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 10659 0.66 0.396257
Target:  5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3'
miRNA:   3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.