miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 28107 0.67 0.538422
Target:  5'- gGCAGUUCagccaaGGCGCGcgccaguucagcaacGACG-UggGCCGCa -3'
miRNA:   3'- -UGUCAAG------CCGCGC---------------CUGCcGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 1867 0.67 0.545959
Target:  5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3'
miRNA:   3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5'
26478 5' -56.5 NC_005357.1 + 25148 0.67 0.491965
Target:  5'- cGCGGcgcCGGCuucGUGGACGGCAAuauccccggcuuGCCGa -3'
miRNA:   3'- -UGUCaa-GCCG---CGCCUGCCGUU------------UGGCg -5'
26478 5' -56.5 NC_005357.1 + 1460 0.67 0.491965
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 37735 0.67 0.491965
Target:  5'- gGCGGcgUCGGUGCcuuucucaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG-----------CCUGCCGuu---UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 1539 0.67 0.491965
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 15509 0.67 0.534132
Target:  5'- uGCAGUUCuGCG-GuGAUgGGCAGGCCGa -3'
miRNA:   3'- -UGUCAAGcCGCgC-CUG-CCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 12017 0.67 0.52346
Target:  5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3'
miRNA:   3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 16237 0.67 0.51287
Target:  5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3'
miRNA:   3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 24557 0.67 0.50237
Target:  5'- cGCAGcgCGGCGaUGGcgaggccggccACGGuCGGGCCGUc -3'
miRNA:   3'- -UGUCaaGCCGC-GCC-----------UGCC-GUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 39834 0.67 0.50237
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 28393 0.67 0.491965
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5'
26478 5' -56.5 NC_005357.1 + 7892 0.68 0.441547
Target:  5'- cCAGggCGGCGCGuGCG-UAGAUCGCc -3'
miRNA:   3'- uGUCaaGCCGCGCcUGCcGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 13562 0.68 0.445474
Target:  5'- aGCAGcgaggacgUGGCGCGGcgcugggacagcuuCGGCAAguccgGCCGCa -3'
miRNA:   3'- -UGUCaa------GCCGCGCCu-------------GCCGUU-----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 5430 0.68 0.451401
Target:  5'- -----aCGGCGCGGAUGGCGG--CGUg -3'
miRNA:   3'- ugucaaGCCGCGCCUGCCGUUugGCG- -5'
26478 5' -56.5 NC_005357.1 + 9852 0.68 0.47859
Target:  5'- cACAGcgUCGGCGguguccugauacguCGGAgCGGCAucGCCGg -3'
miRNA:   3'- -UGUCa-AGCCGC--------------GCCU-GCCGUu-UGGCg -5'
26478 5' -56.5 NC_005357.1 + 7441 0.68 0.471462
Target:  5'- aGCAGUUCGGCuuCGGccuuCGcGCGAAUgGCc -3'
miRNA:   3'- -UGUCAAGCCGc-GCCu---GC-CGUUUGgCG- -5'
26478 5' -56.5 NC_005357.1 + 28609 0.68 0.451401
Target:  5'- uCAGUUCcuugaaccgGGCGCGGAugaggcCGGCcaGuuCCGCg -3'
miRNA:   3'- uGUCAAG---------CCGCGCCU------GCCG--UuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14266 0.68 0.447445
Target:  5'- gGCAa--CGGCGUGGucgaucugaccacCGGCAAGCUGCu -3'
miRNA:   3'- -UGUcaaGCCGCGCCu------------GCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 33589 0.68 0.481661
Target:  5'- gGCuacgUCGGCGaGGACGGUAucaaGGCCGa -3'
miRNA:   3'- -UGuca-AGCCGCgCCUGCCGU----UUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.