miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 33361 0.66 0.585189
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 33313 0.66 0.585189
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 27496 0.66 0.566576
Target:  5'- -gAGUUgGGCGCGcaguCGGCAcuugaGGCCGg -3'
miRNA:   3'- ugUCAAgCCGCGCcu--GCCGU-----UUGGCg -5'
26478 5' -56.5 NC_005357.1 + 33409 0.66 0.585189
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 25044 0.66 0.555697
Target:  5'- aGCGGUgcgUCGGCGCGaugcaGGCAuACCu- -3'
miRNA:   3'- -UGUCA---AGCCGCGCcug--CCGUuUGGcg -5'
26478 5' -56.5 NC_005357.1 + 33265 0.66 0.585189
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 33217 0.66 0.585189
Target:  5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3'
miRNA:   3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 16273 0.66 0.588487
Target:  5'- -----cCGcauCGCaGACGGCGAGCCGCu -3'
miRNA:   3'- ugucaaGCc--GCGcCUGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17745 0.66 0.566576
Target:  5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3'
miRNA:   3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14617 0.66 0.577508
Target:  5'- gGCAGcgCGcGCGaGGACGuGCugcGGCUGCg -3'
miRNA:   3'- -UGUCaaGC-CGCgCCUGC-CGu--UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 39834 0.67 0.50237
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 13307 0.67 0.52346
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26478 5' -56.5 NC_005357.1 + 26361 0.67 0.54488
Target:  5'- uACGGcgCcGCGCGcGGCGGCcacGugCGCg -3'
miRNA:   3'- -UGUCaaGcCGCGC-CUGCCGu--UugGCG- -5'
26478 5' -56.5 NC_005357.1 + 2881 0.67 0.52346
Target:  5'- cCAGUUCGaggauguccaGCGCGGugagcGCGG-AAACCGUc -3'
miRNA:   3'- uGUCAAGC----------CGCGCC-----UGCCgUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 7007 0.67 0.54488
Target:  5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3'
miRNA:   3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 1867 0.67 0.545959
Target:  5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3'
miRNA:   3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5'
26478 5' -56.5 NC_005357.1 + 1460 0.67 0.491965
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 37735 0.67 0.491965
Target:  5'- gGCGGcgUCGGUGCcuuucucaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG-----------CCUGCCGuu---UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 1539 0.67 0.491965
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28393 0.67 0.491965
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.