Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26478 | 5' | -56.5 | NC_005357.1 | + | 29270 | 0.66 | 0.555697 |
Target: 5'- cCGGUgUCGGgGUGGACgugguaGGCGAcgaACUGCu -3' miRNA: 3'- uGUCA-AGCCgCGCCUG------CCGUU---UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 34640 | 0.66 | 0.566576 |
Target: 5'- uGCuGggCGGCgaaggGUGGACGccggcGCAGAUCGCg -3' miRNA: 3'- -UGuCaaGCCG-----CGCCUGC-----CGUUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 25044 | 0.66 | 0.555697 |
Target: 5'- aGCGGUgcgUCGGCGCGaugcaGGCAuACCu- -3' miRNA: 3'- -UGUCA---AGCCGCGCcug--CCGUuUGGcg -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 8778 | 0.66 | 0.555697 |
Target: 5'- gGCAGcacgCGGCGCacGAUGgGUcgGCCGCg -3' miRNA: 3'- -UGUCaa--GCCGCGc-CUGC-CGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 28061 | 0.66 | 0.599502 |
Target: 5'- gACGGUcugcUCGaacaGCGGGCaGguGGCCGCg -3' miRNA: 3'- -UGUCA----AGCcg--CGCCUGcCguUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 27902 | 0.66 | 0.599502 |
Target: 5'- cCAGcaCGuCGCGGAUGGCAcccagcACCGUg -3' miRNA: 3'- uGUCaaGCcGCGCCUGCCGUu-----UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 34879 | 0.66 | 0.566576 |
Target: 5'- cCGGUggCGcCGCGGAuCGaGCAcGCCGCc -3' miRNA: 3'- uGUCAa-GCcGCGCCU-GC-CGUuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 18064 | 0.66 | 0.577508 |
Target: 5'- -----cCGGCGCGGgguGCGuGCuGGGCCGCc -3' miRNA: 3'- ugucaaGCCGCGCC---UGC-CG-UUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 33217 | 0.66 | 0.585189 |
Target: 5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3' miRNA: 3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 8570 | 0.66 | 0.599502 |
Target: 5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3' miRNA: 3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 26569 | 0.66 | 0.554612 |
Target: 5'- aACAGaUCGGCGCG--UGGCAccagcacgacacgGACgGCg -3' miRNA: 3'- -UGUCaAGCCGCGCcuGCCGU-------------UUGgCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 23466 | 0.66 | 0.599502 |
Target: 5'- uACAcgcCGGCGUGGAacaGGUgcGCCGUg -3' miRNA: 3'- -UGUcaaGCCGCGCCUg--CCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 33265 | 0.66 | 0.585189 |
Target: 5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3' miRNA: 3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 17745 | 0.66 | 0.566576 |
Target: 5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3' miRNA: 3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 33361 | 0.66 | 0.585189 |
Target: 5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3' miRNA: 3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 33409 | 0.66 | 0.585189 |
Target: 5'- cGCGGcaCGGCcaccgcuggcuaucGCGGcACGGCc-ACCGCu -3' miRNA: 3'- -UGUCaaGCCG--------------CGCC-UGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 5734 | 0.66 | 0.588487 |
Target: 5'- cACGGUUCGGCuaaGUuuguCGGCGAGuuGCu -3' miRNA: 3'- -UGUCAAGCCG---CGccu-GCCGUUUggCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 16140 | 0.66 | 0.588487 |
Target: 5'- gUAGgacugCGGCcgcacgcugaugGUGGugGGCGuuACCGCg -3' miRNA: 3'- uGUCaa---GCCG------------CGCCugCCGUu-UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 21445 | 0.66 | 0.587387 |
Target: 5'- uGCAuuuccugCGGCGgGGGCGGCAggauguuggccucGACCauGCg -3' miRNA: 3'- -UGUcaa----GCCGCgCCUGCCGU-------------UUGG--CG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 27496 | 0.66 | 0.566576 |
Target: 5'- -gAGUUgGGCGCGcaguCGGCAcuugaGGCCGg -3' miRNA: 3'- ugUCAAgCCGCGCcu--GCCGU-----UUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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