miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 28905 1.11 0.000412
Target:  5'- gACAGUUCGGCGCGGACGGCAAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGCGCCUGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 19469 0.8 0.079051
Target:  5'- cAUAGUUCagcuugcgccaGGUGcCGGugGGCAGGCCGCu -3'
miRNA:   3'- -UGUCAAG-----------CCGC-GCCugCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14590 0.78 0.09947
Target:  5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3'
miRNA:   3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35326 0.76 0.143539
Target:  5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3'
miRNA:   3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 18459 0.76 0.155989
Target:  5'- gACGGUcgCGGCGCcGGCGGCGucGGCCGa -3'
miRNA:   3'- -UGUCAa-GCCGCGcCUGCCGU--UUGGCg -5'
26478 5' -56.5 NC_005357.1 + 12820 0.75 0.164823
Target:  5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3'
miRNA:   3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 4352 0.75 0.169407
Target:  5'- aGCAGaggaaUCGGC-CGGACGGCAGGCggaugCGCa -3'
miRNA:   3'- -UGUCa----AGCCGcGCCUGCCGUUUG-----GCG- -5'
26478 5' -56.5 NC_005357.1 + 5244 0.75 0.169407
Target:  5'- cGCAGUUCGGCcggcaggucGgGGuCGGCAAugCGUc -3'
miRNA:   3'- -UGUCAAGCCG---------CgCCuGCCGUUugGCG- -5'
26478 5' -56.5 NC_005357.1 + 22075 0.73 0.221826
Target:  5'- cGCGG-UCGGCGCGcggcucGAUGGCGugaauGACCGUa -3'
miRNA:   3'- -UGUCaAGCCGCGC------CUGCCGU-----UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17391 0.73 0.224187
Target:  5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3'
miRNA:   3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 33732 0.73 0.227767
Target:  5'- gGCAGcaaucugcgCGGCGCacaccuGGGCGGCGcagcAGCCGCu -3'
miRNA:   3'- -UGUCaa-------GCCGCG------CCUGCCGU----UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28760 0.73 0.239426
Target:  5'- cGCGGUgcgcuucUCGGCGCGcACGGCG--UCGCg -3'
miRNA:   3'- -UGUCA-------AGCCGCGCcUGCCGUuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28287 0.72 0.252888
Target:  5'- -uGGaaCGGC-CGGAaGGCAAGCCGCu -3'
miRNA:   3'- ugUCaaGCCGcGCCUgCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35435 0.72 0.252888
Target:  5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3'
miRNA:   3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 8221 0.72 0.258178
Target:  5'- cCAGUUCGuGCGCGGccgugcccucguCGGCGAAgUCGCu -3'
miRNA:   3'- uGUCAAGC-CGCGCCu-----------GCCGUUU-GGCG- -5'
26478 5' -56.5 NC_005357.1 + 18159 0.72 0.266282
Target:  5'- cACuGUcCGGCGCcacgcucaaGG-UGGCAAGCCGCg -3'
miRNA:   3'- -UGuCAaGCCGCG---------CCuGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 9221 0.72 0.285266
Target:  5'- cGCAcGUucugCGGCGCGcccGGCGGCAGuuccaguucaccauACCGCa -3'
miRNA:   3'- -UGU-CAa---GCCGCGC---CUGCCGUU--------------UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 38542 0.71 0.29478
Target:  5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3'
miRNA:   3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 26142 0.71 0.29478
Target:  5'- gGCAGaUUUGGCGCa-GCGGCucGCCGUc -3'
miRNA:   3'- -UGUC-AAGCCGCGccUGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 37888 0.71 0.317676
Target:  5'- cCAGUUC--CGCGG-CGGCAcGACCGCc -3'
miRNA:   3'- uGUCAAGccGCGCCuGCCGU-UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.