miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 37406 0.69 0.403395
Target:  5'- aGCGGggcaucgCGGCGCuGAaaGCGGACUGCg -3'
miRNA:   3'- -UGUCaa-----GCCGCGcCUgcCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 38880 0.7 0.367396
Target:  5'- -----gCGGCGCGGuuGGCgGGACUGCg -3'
miRNA:   3'- ugucaaGCCGCGCCugCCG-UUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 25748 0.7 0.367396
Target:  5'- gGCAGcacgcUgGGCGCGcugcugggcGGCGGCAAcgaugGCCGCg -3'
miRNA:   3'- -UGUCa----AgCCGCGC---------CUGCCGUU-----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 18323 0.7 0.375301
Target:  5'- gGCAGUagCGGCGCagcuuGGugGGCAuagggauGACCa- -3'
miRNA:   3'- -UGUCAa-GCCGCG-----CCugCCGU-------UUGGcg -5'
26478 5' -56.5 NC_005357.1 + 37310 0.7 0.376187
Target:  5'- uGCAGUUcaaCGGCGCcagccgcaccGGACgcugGGCcGGCCGCc -3'
miRNA:   3'- -UGUCAA---GCCGCG----------CCUG----CCGuUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35848 0.7 0.376187
Target:  5'- cGCAGcccccUGGCcgagGCGGAUGGCAAGCCcuacGCg -3'
miRNA:   3'- -UGUCaa---GCCG----CGCCUGCCGUUUGG----CG- -5'
26478 5' -56.5 NC_005357.1 + 24287 0.69 0.384218
Target:  5'- gACAGUgaccacgUgGGgGCGGugagguCGGCGAgcaGCCGCg -3'
miRNA:   3'- -UGUCA-------AgCCgCGCCu-----GCCGUU---UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 8636 0.69 0.384218
Target:  5'- uGCGGUggcgaggUCGccggccuucaucGCGCGGuCGGCAuugcguGCCGCg -3'
miRNA:   3'- -UGUCA-------AGC------------CGCGCCuGCCGUu-----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28653 0.69 0.385118
Target:  5'- cGCAGUgccagaUCGGUGCcGGCGGCcucGCCaGCg -3'
miRNA:   3'- -UGUCA------AGCCGCGcCUGCCGuu-UGG-CG- -5'
26478 5' -56.5 NC_005357.1 + 35968 0.7 0.358749
Target:  5'- uGCAGUUCcuGCGC-GACGGCGAcgccuUCGCg -3'
miRNA:   3'- -UGUCAAGc-CGCGcCUGCCGUUu----GGCG- -5'
26478 5' -56.5 NC_005357.1 + 27697 0.7 0.358749
Target:  5'- uACAGgcCGcGCGcCGGcaGCGGCucGCCGCc -3'
miRNA:   3'- -UGUCaaGC-CGC-GCC--UGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 23643 0.7 0.333669
Target:  5'- cGCGGUagcCGGCgGCGGGCaGCA-ACUGCa -3'
miRNA:   3'- -UGUCAa--GCCG-CGCCUGcCGUuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 18459 0.76 0.155989
Target:  5'- gACGGUcgCGGCGCcGGCGGCGucGGCCGa -3'
miRNA:   3'- -UGUCAa-GCCGCGcCUGCCGU--UUGGCg -5'
26478 5' -56.5 NC_005357.1 + 22075 0.73 0.221826
Target:  5'- cGCGG-UCGGCGCGcggcucGAUGGCGugaauGACCGUa -3'
miRNA:   3'- -UGUCaAGCCGCGC------CUGCCGU-----UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 33732 0.73 0.227767
Target:  5'- gGCAGcaaucugcgCGGCGCacaccuGGGCGGCGcagcAGCCGCu -3'
miRNA:   3'- -UGUCaa-------GCCGCG------CCUGCCGU----UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28760 0.73 0.239426
Target:  5'- cGCGGUgcgcuucUCGGCGCGcACGGCG--UCGCg -3'
miRNA:   3'- -UGUCA-------AGCCGCGCcUGCCGUuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 9221 0.72 0.285266
Target:  5'- cGCAcGUucugCGGCGCGcccGGCGGCAGuuccaguucaccauACCGCa -3'
miRNA:   3'- -UGU-CAa---GCCGCGC---CUGCCGUU--------------UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 26142 0.71 0.29478
Target:  5'- gGCAGaUUUGGCGCa-GCGGCucGCCGUc -3'
miRNA:   3'- -UGUC-AAGCCGCGccUGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 23574 0.71 0.3256
Target:  5'- gGCAGgugCGG-GCGGGgGGCGAcgaugGCCGUc -3'
miRNA:   3'- -UGUCaa-GCCgCGCCUgCCGUU-----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 41433 0.71 0.3256
Target:  5'- cCAGU--GGCGCGGGCaGCGGGCUGa -3'
miRNA:   3'- uGUCAagCCGCGCCUGcCGUUUGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.