miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 28905 1.11 0.000412
Target:  5'- gACAGUUCGGCGCGGACGGCAAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGCGCCUGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 2376 0.69 0.422212
Target:  5'- aACGGUUCgaGGCGCacGGcAUGGCGGucGCUGCc -3'
miRNA:   3'- -UGUCAAG--CCGCG--CC-UGCCGUU--UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 41063 0.69 0.431816
Target:  5'- uGCGcUUCGGuCGcCGGAUGcGCAAgGCCGCc -3'
miRNA:   3'- -UGUcAAGCC-GC-GCCUGC-CGUU-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 8570 0.66 0.599502
Target:  5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3'
miRNA:   3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 5244 0.75 0.169407
Target:  5'- cGCAGUUCGGCcggcaggucGgGGuCGGCAAugCGUc -3'
miRNA:   3'- -UGUCAAGCCG---------CgCCuGCCGUUugGCG- -5'
26478 5' -56.5 NC_005357.1 + 4352 0.75 0.169407
Target:  5'- aGCAGaggaaUCGGC-CGGACGGCAGGCggaugCGCa -3'
miRNA:   3'- -UGUCa----AGCCGcGCCUGCCGUUUG-----GCG- -5'
26478 5' -56.5 NC_005357.1 + 28287 0.72 0.252888
Target:  5'- -uGGaaCGGC-CGGAaGGCAAGCCGCu -3'
miRNA:   3'- ugUCaaGCCGcGCCUgCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35435 0.72 0.252888
Target:  5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3'
miRNA:   3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 38542 0.71 0.29478
Target:  5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3'
miRNA:   3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 4042 0.69 0.403395
Target:  5'- -----cCGGcCGCGGcgaGCGGCAGGCCaGCg -3'
miRNA:   3'- ugucaaGCC-GCGCC---UGCCGUUUGG-CG- -5'
26478 5' -56.5 NC_005357.1 + 42071 0.7 0.350244
Target:  5'- --uGUUCucgGGCcugGCGGACGGCcuGCUGCg -3'
miRNA:   3'- uguCAAG---CCG---CGCCUGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 18159 0.72 0.266282
Target:  5'- cACuGUcCGGCGCcacgcucaaGG-UGGCAAGCCGCg -3'
miRNA:   3'- -UGuCAaGCCGCG---------CCuGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14590 0.78 0.09947
Target:  5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3'
miRNA:   3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 28183 0.7 0.376187
Target:  5'- cCAGUUgcGCGUGGACGacGCAcuuAACCGCg -3'
miRNA:   3'- uGUCAAgcCGCGCCUGC--CGU---UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35326 0.76 0.143539
Target:  5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3'
miRNA:   3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 8221 0.72 0.258178
Target:  5'- cCAGUUCGuGCGCGGccgugcccucguCGGCGAAgUCGCu -3'
miRNA:   3'- uGUCAAGC-CGCGCCu-----------GCCGUUU-GGCG- -5'
26478 5' -56.5 NC_005357.1 + 40288 0.69 0.394188
Target:  5'- uACGG--CGGCGCGGuugacCGGCu-GCUGCa -3'
miRNA:   3'- -UGUCaaGCCGCGCCu----GCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 32637 0.69 0.431816
Target:  5'- -uGGUUCGGCGUGcGCGaccuGGCCGCg -3'
miRNA:   3'- ugUCAAGCCGCGCcUGCcgu-UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 12820 0.75 0.164823
Target:  5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3'
miRNA:   3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17391 0.73 0.224187
Target:  5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3'
miRNA:   3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.