Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26478 | 5' | -56.5 | NC_005357.1 | + | 23574 | 0.71 | 0.3256 |
Target: 5'- gGCAGgugCGG-GCGGGgGGCGAcgaugGCCGUc -3' miRNA: 3'- -UGUCaa-GCCgCGCCUgCCGUU-----UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 41433 | 0.71 | 0.3256 |
Target: 5'- cCAGU--GGCGCGGGCaGCGGGCUGa -3' miRNA: 3'- uGUCAagCCGCGCCUGcCGUUUGGCg -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 23643 | 0.7 | 0.333669 |
Target: 5'- cGCGGUagcCGGCgGCGGGCaGCA-ACUGCa -3' miRNA: 3'- -UGUCAa--GCCG-CGCCUGcCGUuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 42071 | 0.7 | 0.350244 |
Target: 5'- --uGUUCucgGGCcugGCGGACGGCcuGCUGCg -3' miRNA: 3'- uguCAAG---CCG---CGCCUGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 27697 | 0.7 | 0.358749 |
Target: 5'- uACAGgcCGcGCGcCGGcaGCGGCucGCCGCc -3' miRNA: 3'- -UGUCaaGC-CGC-GCC--UGCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 35968 | 0.7 | 0.358749 |
Target: 5'- uGCAGUUCcuGCGC-GACGGCGAcgccuUCGCg -3' miRNA: 3'- -UGUCAAGc-CGCGcCUGCCGUUu----GGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 38880 | 0.7 | 0.367396 |
Target: 5'- -----gCGGCGCGGuuGGCgGGACUGCg -3' miRNA: 3'- ugucaaGCCGCGCCugCCG-UUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 25748 | 0.7 | 0.367396 |
Target: 5'- gGCAGcacgcUgGGCGCGcugcugggcGGCGGCAAcgaugGCCGCg -3' miRNA: 3'- -UGUCa----AgCCGCGC---------CUGCCGUU-----UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 18323 | 0.7 | 0.375301 |
Target: 5'- gGCAGUagCGGCGCagcuuGGugGGCAuagggauGACCa- -3' miRNA: 3'- -UGUCAa-GCCGCG-----CCugCCGU-------UUGGcg -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 37310 | 0.7 | 0.376187 |
Target: 5'- uGCAGUUcaaCGGCGCcagccgcaccGGACgcugGGCcGGCCGCc -3' miRNA: 3'- -UGUCAA---GCCGCG----------CCUG----CCGuUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 35848 | 0.7 | 0.376187 |
Target: 5'- cGCAGcccccUGGCcgagGCGGAUGGCAAGCCcuacGCg -3' miRNA: 3'- -UGUCaa---GCCG----CGCCUGCCGUUUGG----CG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 28183 | 0.7 | 0.376187 |
Target: 5'- cCAGUUgcGCGUGGACGacGCAcuuAACCGCg -3' miRNA: 3'- uGUCAAgcCGCGCCUGC--CGU---UUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 24287 | 0.69 | 0.384218 |
Target: 5'- gACAGUgaccacgUgGGgGCGGugagguCGGCGAgcaGCCGCg -3' miRNA: 3'- -UGUCA-------AgCCgCGCCu-----GCCGUU---UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 8636 | 0.69 | 0.384218 |
Target: 5'- uGCGGUggcgaggUCGccggccuucaucGCGCGGuCGGCAuugcguGCCGCg -3' miRNA: 3'- -UGUCA-------AGC------------CGCGCCuGCCGUu-----UGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 28653 | 0.69 | 0.385118 |
Target: 5'- cGCAGUgccagaUCGGUGCcGGCGGCcucGCCaGCg -3' miRNA: 3'- -UGUCA------AGCCGCGcCUGCCGuu-UGG-CG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 40288 | 0.69 | 0.394188 |
Target: 5'- uACGG--CGGCGCGGuugacCGGCu-GCUGCa -3' miRNA: 3'- -UGUCaaGCCGCGCCu----GCCGuuUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 4042 | 0.69 | 0.403395 |
Target: 5'- -----cCGGcCGCGGcgaGCGGCAGGCCaGCg -3' miRNA: 3'- ugucaaGCC-GCGCC---UGCCGUUUGG-CG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 37406 | 0.69 | 0.403395 |
Target: 5'- aGCGGggcaucgCGGCGCuGAaaGCGGACUGCg -3' miRNA: 3'- -UGUCaa-----GCCGCGcCUgcCGUUUGGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 9321 | 0.69 | 0.403395 |
Target: 5'- gGCGGcgcacgUCGGCGCGGcgggcgGCGGCAuccuuUUGCa -3' miRNA: 3'- -UGUCa-----AGCCGCGCC------UGCCGUuu---GGCG- -5' |
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26478 | 5' | -56.5 | NC_005357.1 | + | 38040 | 0.69 | 0.422212 |
Target: 5'- -aAGgccCGGCGC-GACGGCGccuGGCUGCg -3' miRNA: 3'- ugUCaa-GCCGCGcCUGCCGU---UUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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