miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 9321 0.69 0.403395
Target:  5'- gGCGGcgcacgUCGGCGCGGcgggcgGCGGCAuccuuUUGCa -3'
miRNA:   3'- -UGUCa-----AGCCGCGCC------UGCCGUuu---GGCG- -5'
26478 5' -56.5 NC_005357.1 + 9778 0.68 0.481661
Target:  5'- gGCAGcuucgCGGCGCcgaacuucgacaGGACaGC-GACCGCg -3'
miRNA:   3'- -UGUCaa---GCCGCG------------CCUGcCGuUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 9852 0.68 0.47859
Target:  5'- cACAGcgUCGGCGguguccugauacguCGGAgCGGCAucGCCGg -3'
miRNA:   3'- -UGUCa-AGCCGC--------------GCCU-GCCGUu-UGGCg -5'
26478 5' -56.5 NC_005357.1 + 10059 0.68 0.451401
Target:  5'- uGCuGggCGGC-CGGGgccuCGGCGgcGACCGCa -3'
miRNA:   3'- -UGuCaaGCCGcGCCU----GCCGU--UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 12017 0.67 0.52346
Target:  5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3'
miRNA:   3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 12820 0.75 0.164823
Target:  5'- aGCGcc-CGGCGCuGGACaacuGGCAAACCGCg -3'
miRNA:   3'- -UGUcaaGCCGCG-CCUG----CCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 13307 0.67 0.52346
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26478 5' -56.5 NC_005357.1 + 13562 0.68 0.445474
Target:  5'- aGCAGcgaggacgUGGCGCGGcgcugggacagcuuCGGCAAguccgGCCGCa -3'
miRNA:   3'- -UGUCaa------GCCGCGCCu-------------GCCGUU-----UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14266 0.68 0.447445
Target:  5'- gGCAa--CGGCGUGGucgaucugaccacCGGCAAGCUGCu -3'
miRNA:   3'- -UGUcaaGCCGCGCCu------------GCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14590 0.78 0.09947
Target:  5'- aGCAG--CGGCGCGGcCGGCGccACCGCg -3'
miRNA:   3'- -UGUCaaGCCGCGCCuGCCGUu-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 14617 0.66 0.577508
Target:  5'- gGCAGcgCGcGCGaGGACGuGCugcGGCUGCg -3'
miRNA:   3'- -UGUCaaGC-CGCgCCUGC-CGu--UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 15151 0.66 0.577508
Target:  5'- ------aGGCGC--GCGGCGAACUGCg -3'
miRNA:   3'- ugucaagCCGCGccUGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 15509 0.67 0.534132
Target:  5'- uGCAGUUCuGCG-GuGAUgGGCAGGCCGa -3'
miRNA:   3'- -UGUCAAGcCGCgC-CUG-CCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 16140 0.66 0.588487
Target:  5'- gUAGgacugCGGCcgcacgcugaugGUGGugGGCGuuACCGCg -3'
miRNA:   3'- uGUCaa---GCCG------------CGCCugCCGUu-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 16237 0.67 0.51287
Target:  5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3'
miRNA:   3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5'
26478 5' -56.5 NC_005357.1 + 16273 0.66 0.588487
Target:  5'- -----cCGcauCGCaGACGGCGAGCCGCu -3'
miRNA:   3'- ugucaaGCc--GCGcCUGCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17026 0.68 0.461374
Target:  5'- --uGggCGGCaCGGACGGCuacAACuCGCa -3'
miRNA:   3'- uguCaaGCCGcGCCUGCCGu--UUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 17391 0.73 0.224187
Target:  5'- gGCGGaUCGcGCGacacgugguuugacuCGGACGGCAAcCCGCu -3'
miRNA:   3'- -UGUCaAGC-CGC---------------GCCUGCCGUUuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17745 0.66 0.566576
Target:  5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3'
miRNA:   3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 17765 0.67 0.543802
Target:  5'- uGCAGUUCGagcagcgagucgcGCGCGaACGGauaGAAgCGCg -3'
miRNA:   3'- -UGUCAAGC-------------CGCGCcUGCCg--UUUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.