Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 41829 | 0.69 | 0.512972 |
Target: 5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3' miRNA: 3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 41684 | 0.68 | 0.591398 |
Target: 5'- gACUGGAAaGACCuggCCGGCGUUGUCGGc -3' miRNA: 3'- -UGACCUUgUUGG---GGCUGCGGUAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 40367 | 0.72 | 0.345132 |
Target: 5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3' miRNA: 3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 39987 | 0.66 | 0.671573 |
Target: 5'- cCUGGGccGCAGuuUCGGCGCCuUCAAa -3' miRNA: 3'- uGACCU--UGUUggGGCUGCGGuAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 38602 | 0.68 | 0.602823 |
Target: 5'- cGCUGGAuuggucgcaacgGCGcCCCCGAcCGCCugGUCAu- -3' miRNA: 3'- -UGACCU------------UGUuGGGGCU-GCGG--UAGUua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 38135 | 0.69 | 0.502091 |
Target: 5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3' miRNA: 3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 37163 | 0.7 | 0.439149 |
Target: 5'- cGCUGGAACGacgcauugccgACCCCGACcuGCCGgcCGAa -3' miRNA: 3'- -UGACCUUGU-----------UGGGGCUG--CGGUa-GUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 37129 | 0.66 | 0.727848 |
Target: 5'- cCUGGAAaauauCGACgCCGugGCCGaCAAc -3' miRNA: 3'- uGACCUU-----GUUGgGGCugCGGUaGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 36135 | 0.68 | 0.602823 |
Target: 5'- cACcGGAGauaAGCCCCGGCGCCc-CAGc -3' miRNA: 3'- -UGaCCUUg--UUGGGGCUGCGGuaGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 34367 | 0.66 | 0.705559 |
Target: 5'- --aGGcAGCGACCUgGGCGCgCGUCAu- -3' miRNA: 3'- ugaCC-UUGUUGGGgCUGCG-GUAGUua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 33486 | 0.7 | 0.48064 |
Target: 5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3' miRNA: 3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 33195 | 0.7 | 0.470083 |
Target: 5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3' miRNA: 3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 32968 | 0.69 | 0.546163 |
Target: 5'- uACUGGcaaGACCCgGACGCCAa---- -3' miRNA: 3'- -UGACCuugUUGGGgCUGCGGUaguua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 30267 | 0.67 | 0.625746 |
Target: 5'- --cGGAcACuGACCCCGACGCCuacgCGGa -3' miRNA: 3'- ugaCCU-UG-UUGGGGCUGCGGua--GUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 29982 | 0.66 | 0.727848 |
Target: 5'- cCUGGAuGCAGCCgUCGAacggGCCAUCGu- -3' miRNA: 3'- uGACCU-UGUUGG-GGCUg---CGGUAGUua -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 28683 | 0.69 | 0.52395 |
Target: 5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3' miRNA: 3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 28529 | 1.05 | 0.0018 |
Target: 5'- aACUGGAACAACCCCGACGCCAUCAAUu -3' miRNA: 3'- -UGACCUUGUUGGGGCUGCGGUAGUUA- -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 26964 | 0.67 | 0.660147 |
Target: 5'- aACUGGAcgGCAGCUUCGGCcaaggGCgCGUCAAg -3' miRNA: 3'- -UGACCU--UGUUGGGGCUG-----CG-GUAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 24767 | 0.66 | 0.694292 |
Target: 5'- ------cCAGCCcgCCGACGCCAUCAAg -3' miRNA: 3'- ugaccuuGUUGG--GGCUGCGGUAGUUa -5' |
|||||||
26479 | 3' | -53.6 | NC_005357.1 | + | 24039 | 0.66 | 0.716749 |
Target: 5'- -gUGGcc--GCCaCCGGCGCCAUCGGc -3' miRNA: 3'- ugACCuuguUGG-GGCUGCGGUAGUUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home