miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 5' -47.9 NC_005357.1 + 1569 0.67 0.944452
Target:  5'- gGAUgGgCAUAuccuuguaguGGCCGccGCCUUCCu -3'
miRNA:   3'- gCUAgC-GUAUuu--------CCGGCuuUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 4368 0.67 0.944452
Target:  5'- cCGGUgCGCGUGAAggcgacGGCCGAcuugucGGCCUUg- -3'
miRNA:   3'- -GCUA-GCGUAUUU------CCGGCU------UUGGAAgg -5'
26479 5' -47.9 NC_005357.1 + 4659 0.68 0.914944
Target:  5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3'
miRNA:   3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5'
26479 5' -47.9 NC_005357.1 + 4813 0.67 0.944452
Target:  5'- ----aGCuuGUAGAGGUCGggGCCggcgCCg -3'
miRNA:   3'- gcuagCG--UAUUUCCGGCuuUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 5290 0.68 0.933588
Target:  5'- uCGAUugcUGCAUGucuggcAGGUCGAGGCCguaggCCg -3'
miRNA:   3'- -GCUA---GCGUAUu-----UCCGGCUUUGGaa---GG- -5'
26479 5' -47.9 NC_005357.1 + 7136 0.73 0.705299
Target:  5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3'
miRNA:   3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 8610 0.68 0.921472
Target:  5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3'
miRNA:   3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5'
26479 5' -47.9 NC_005357.1 + 9498 0.7 0.823641
Target:  5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3'
miRNA:   3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 10794 0.7 0.858091
Target:  5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3'
miRNA:   3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 13294 0.67 0.939176
Target:  5'- cCGAUUGCAgcgc-GCCGggGCCggCg -3'
miRNA:   3'- -GCUAGCGUauuucCGGCuuUGGaaGg -5'
26479 5' -47.9 NC_005357.1 + 14915 0.66 0.966299
Target:  5'- cCGAcCGCGccgagaagcUGgcGGCCGAGGCCg-CCg -3'
miRNA:   3'- -GCUaGCGU---------AUuuCCGGCUUUGGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 15456 0.69 0.877688
Target:  5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3'
miRNA:   3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5'
26479 5' -47.9 NC_005357.1 + 19091 0.66 0.969805
Target:  5'- gCGAUUGCAggccGGCCugcGAAcCCUUCg -3'
miRNA:   3'- -GCUAGCGUauuuCCGG---CUUuGGAAGg -5'
26479 5' -47.9 NC_005357.1 + 19196 0.73 0.682187
Target:  5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3'
miRNA:   3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 19256 0.73 0.705299
Target:  5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3'
miRNA:   3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5'
26479 5' -47.9 NC_005357.1 + 20318 0.68 0.921472
Target:  5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3'
miRNA:   3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5'
26479 5' -47.9 NC_005357.1 + 23568 0.67 0.958444
Target:  5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3'
miRNA:   3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 24117 0.68 0.908103
Target:  5'- uGcgCGCGUAGGGGUCGuaguCCagCCg -3'
miRNA:   3'- gCuaGCGUAUUUCCGGCuuu-GGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 24566 0.67 0.939176
Target:  5'- gCGAUgGCG---AGGCCGGccacggucgGGCCgUCCg -3'
miRNA:   3'- -GCUAgCGUauuUCCGGCU---------UUGGaAGG- -5'
26479 5' -47.9 NC_005357.1 + 28563 1.15 0.002072
Target:  5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3'
miRNA:   3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.