miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 5' -47.9 NC_005357.1 + 34984 0.77 0.464929
Target:  5'- --uUCGCGcGAAGGCCGAAGCCgaacugcuggCCg -3'
miRNA:   3'- gcuAGCGUaUUUCCGGCUUUGGaa--------GG- -5'
26479 5' -47.9 NC_005357.1 + 37334 0.66 0.973043
Target:  5'- cCGGaCGCu---GGGCCGGccGCCUguUCCa -3'
miRNA:   3'- -GCUaGCGuauuUCCGGCUu-UGGA--AGG- -5'
26479 5' -47.9 NC_005357.1 + 19091 0.66 0.969805
Target:  5'- gCGAUUGCAggccGGCCugcGAAcCCUUCg -3'
miRNA:   3'- -GCUAGCGUauuuCCGG---CUUuGGAAGg -5'
26479 5' -47.9 NC_005357.1 + 41809 0.67 0.954081
Target:  5'- ---cCGCGccGAGGCUGAGGCCaUCa -3'
miRNA:   3'- gcuaGCGUauUUCCGGCUUUGGaAGg -5'
26479 5' -47.9 NC_005357.1 + 4368 0.67 0.944452
Target:  5'- cCGGUgCGCGUGAAggcgacGGCCGAcuugucGGCCUUg- -3'
miRNA:   3'- -GCUA-GCGUAUUU------CCGGCU------UUGGAAgg -5'
26479 5' -47.9 NC_005357.1 + 13294 0.67 0.939176
Target:  5'- cCGAUUGCAgcgc-GCCGggGCCggCg -3'
miRNA:   3'- -GCUAGCGUauuucCGGCuuUGGaaGg -5'
26479 5' -47.9 NC_005357.1 + 24566 0.67 0.939176
Target:  5'- gCGAUgGCG---AGGCCGGccacggucgGGCCgUCCg -3'
miRNA:   3'- -GCUAgCGUauuUCCGGCU---------UUGGaAGG- -5'
26479 5' -47.9 NC_005357.1 + 32362 0.68 0.921472
Target:  5'- gCGGUCGCcgccGAGGCCccGGCCgcCCa -3'
miRNA:   3'- -GCUAGCGuau-UUCCGGcuUUGGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 20318 0.68 0.921472
Target:  5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3'
miRNA:   3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5'
26479 5' -47.9 NC_005357.1 + 24117 0.68 0.908103
Target:  5'- uGcgCGCGUAGGGGUCGuaguCCagCCg -3'
miRNA:   3'- gCuaGCGUAUUUCCGGCuuu-GGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 15456 0.69 0.877688
Target:  5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3'
miRNA:   3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5'
26479 5' -47.9 NC_005357.1 + 10794 0.7 0.858091
Target:  5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3'
miRNA:   3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 28622 0.71 0.813768
Target:  5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3'
miRNA:   3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5'
26479 5' -47.9 NC_005357.1 + 7136 0.73 0.705299
Target:  5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3'
miRNA:   3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 41381 0.72 0.772239
Target:  5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3'
miRNA:   3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 19256 0.73 0.705299
Target:  5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3'
miRNA:   3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5'
26479 5' -47.9 NC_005357.1 + 19196 0.73 0.682187
Target:  5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3'
miRNA:   3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 33780 0.76 0.508575
Target:  5'- cCGAccgCGCgAUGAAGGCCGGcGACCUcgCCa -3'
miRNA:   3'- -GCUa--GCG-UAUUUCCGGCU-UUGGAa-GG- -5'
26479 5' -47.9 NC_005357.1 + 29346 0.77 0.497493
Target:  5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3'
miRNA:   3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5'
26479 5' -47.9 NC_005357.1 + 29979 0.66 0.972731
Target:  5'- cCGAUCuugaGCAUGAAGGUCGGcgacaucGACagcgCCa -3'
miRNA:   3'- -GCUAG----CGUAUUUCCGGCU-------UUGgaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.