miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26479 5' -47.9 NC_005357.1 + 9498 0.7 0.823641
Target:  5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3'
miRNA:   3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 23568 0.67 0.958444
Target:  5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3'
miRNA:   3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 14915 0.66 0.966299
Target:  5'- cCGAcCGCGccgagaagcUGgcGGCCGAGGCCg-CCg -3'
miRNA:   3'- -GCUaGCGU---------AUuuCCGGCUUUGGaaGG- -5'
26479 5' -47.9 NC_005357.1 + 28563 1.15 0.002072
Target:  5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3'
miRNA:   3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 29346 0.77 0.497493
Target:  5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3'
miRNA:   3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5'
26479 5' -47.9 NC_005357.1 + 33780 0.76 0.508575
Target:  5'- cCGAccgCGCgAUGAAGGCCGGcGACCUcgCCa -3'
miRNA:   3'- -GCUa--GCG-UAUUUCCGGCU-UUGGAa-GG- -5'
26479 5' -47.9 NC_005357.1 + 19196 0.73 0.682187
Target:  5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3'
miRNA:   3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 19256 0.73 0.705299
Target:  5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3'
miRNA:   3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5'
26479 5' -47.9 NC_005357.1 + 41381 0.72 0.772239
Target:  5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3'
miRNA:   3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 4813 0.67 0.944452
Target:  5'- ----aGCuuGUAGAGGUCGggGCCggcgCCg -3'
miRNA:   3'- gcuagCG--UAUUUCCGGCuuUGGaa--GG- -5'
26479 5' -47.9 NC_005357.1 + 1569 0.67 0.944452
Target:  5'- gGAUgGgCAUAuccuuguaguGGCCGccGCCUUCCu -3'
miRNA:   3'- gCUAgC-GUAUuu--------CCGGCuuUGGAAGG- -5'
26479 5' -47.9 NC_005357.1 + 41069 0.69 0.900952
Target:  5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3'
miRNA:   3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5'
26479 5' -47.9 NC_005357.1 + 31715 0.67 0.958021
Target:  5'- aCGA-CGCAUucaagcaAucGGCCGAGGCCgugcgcgcugCCg -3'
miRNA:   3'- -GCUaGCGUA-------UuuCCGGCUUUGGaa--------GG- -5'
26479 5' -47.9 NC_005357.1 + 32890 0.68 0.914944
Target:  5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3'
miRNA:   3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5'
26479 5' -47.9 NC_005357.1 + 5290 0.68 0.933588
Target:  5'- uCGAUugcUGCAUGucuggcAGGUCGAGGCCguaggCCg -3'
miRNA:   3'- -GCUA---GCGUAUu-----UCCGGCUUUGGaa---GG- -5'
26479 5' -47.9 NC_005357.1 + 34545 0.67 0.958444
Target:  5'- aGGgcaGCAUuucccgaccAucGGCCGAAGCCUgaaCCg -3'
miRNA:   3'- gCUag-CGUA---------UuuCCGGCUUUGGAa--GG- -5'
26479 5' -47.9 NC_005357.1 + 29979 0.66 0.972731
Target:  5'- cCGAUCuugaGCAUGAAGGUCGGcgacaucGACagcgCCa -3'
miRNA:   3'- -GCUAG----CGUAUUUCCGGCU-------UUGgaa-GG- -5'
26479 5' -47.9 NC_005357.1 + 4659 0.68 0.914944
Target:  5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3'
miRNA:   3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5'
26479 5' -47.9 NC_005357.1 + 8610 0.68 0.921472
Target:  5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3'
miRNA:   3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5'
26479 5' -47.9 NC_005357.1 + 33983 0.71 0.803679
Target:  5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3'
miRNA:   3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.