Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26479 | 5' | -47.9 | NC_005357.1 | + | 23568 | 0.67 | 0.958444 |
Target: 5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3' miRNA: 3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 14915 | 0.66 | 0.966299 |
Target: 5'- cCGAcCGCGccgagaagcUGgcGGCCGAGGCCg-CCg -3' miRNA: 3'- -GCUaGCGU---------AUuuCCGGCUUUGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 4659 | 0.68 | 0.914944 |
Target: 5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3' miRNA: 3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 32890 | 0.68 | 0.914944 |
Target: 5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3' miRNA: 3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 41069 | 0.69 | 0.900952 |
Target: 5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3' miRNA: 3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 28563 | 1.15 | 0.002072 |
Target: 5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3' miRNA: 3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 29346 | 0.77 | 0.497493 |
Target: 5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3' miRNA: 3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 33780 | 0.76 | 0.508575 |
Target: 5'- cCGAccgCGCgAUGAAGGCCGGcGACCUcgCCa -3' miRNA: 3'- -GCUa--GCG-UAUUUCCGGCU-UUGGAa-GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 19196 | 0.73 | 0.682187 |
Target: 5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3' miRNA: 3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 19256 | 0.73 | 0.705299 |
Target: 5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3' miRNA: 3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 41381 | 0.72 | 0.772239 |
Target: 5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3' miRNA: 3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 33983 | 0.71 | 0.803679 |
Target: 5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3' miRNA: 3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 9498 | 0.7 | 0.823641 |
Target: 5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3' miRNA: 3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5' |
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26479 | 5' | -47.9 | NC_005357.1 | + | 29979 | 0.66 | 0.972731 |
Target: 5'- cCGAUCuugaGCAUGAAGGUCGGcgacaucGACagcgCCa -3' miRNA: 3'- -GCUAG----CGUAUUUCCGGCU-------UUGgaa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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