miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26480 5' -55.5 NC_005357.1 + 12017 0.76 0.138181
Target:  5'- aGCAGCGCGGccguGGCCGGCGAGg----- -3'
miRNA:   3'- aCGUCGUGCU----CCGGUCGCUCauguuc -5'
26480 5' -55.5 NC_005357.1 + 3513 0.66 0.611694
Target:  5'- cGCAGCGCGAGaacCCgagAGCGAcGUGCc-- -3'
miRNA:   3'- aCGUCGUGCUCc--GG---UCGCU-CAUGuuc -5'
26480 5' -55.5 NC_005357.1 + 29057 0.66 0.611694
Target:  5'- gGCGGCuCGuAGGCCAucaGCGGGU-CAu- -3'
miRNA:   3'- aCGUCGuGC-UCCGGU---CGCUCAuGUuc -5'
26480 5' -55.5 NC_005357.1 + 8117 0.66 0.575598
Target:  5'- cUGCAcCGCGcGGCCGGCGuugguugugggcGUGCGGGu -3'
miRNA:   3'- -ACGUcGUGCuCCGGUCGCu-----------CAUGUUC- -5'
26480 5' -55.5 NC_005357.1 + 24304 0.66 0.566641
Target:  5'- gGCGGU--GAGGUCGGCGAGcagccGCGGGu -3'
miRNA:   3'- aCGUCGugCUCCGGUCGCUCa----UGUUC- -5'
26480 5' -55.5 NC_005357.1 + 39603 0.67 0.555496
Target:  5'- cGCuGCGCGuGGCC-GCGAGcACcuGg -3'
miRNA:   3'- aCGuCGUGCuCCGGuCGCUCaUGuuC- -5'
26480 5' -55.5 NC_005357.1 + 8843 0.67 0.555496
Target:  5'- cGCAaCGCG-GGCCAGCGcGUugGc- -3'
miRNA:   3'- aCGUcGUGCuCCGGUCGCuCAugUuc -5'
26480 5' -55.5 NC_005357.1 + 16310 0.67 0.555496
Target:  5'- cGC-GCACGGGa--AGCGAGUACGAc -3'
miRNA:   3'- aCGuCGUGCUCcggUCGCUCAUGUUc -5'
26480 5' -55.5 NC_005357.1 + 33767 0.67 0.522483
Target:  5'- aGCAGC-CGcuGCacaCAGCGAGUACGGc -3'
miRNA:   3'- aCGUCGuGCucCG---GUCGCUCAUGUUc -5'
26480 5' -55.5 NC_005357.1 + 9391 0.68 0.46929
Target:  5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3'
miRNA:   3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5'
26480 5' -55.5 NC_005357.1 + 13298 0.74 0.210353
Target:  5'- uUGCAGCGCGccgGGGCCGGCGuuGUAgGc- -3'
miRNA:   3'- -ACGUCGUGC---UCCGGUCGCu-CAUgUuc -5'
26480 5' -55.5 NC_005357.1 + 31100 0.72 0.267807
Target:  5'- -uCGGUGC-AGGCCGGCGAGUgguGCGAGa -3'
miRNA:   3'- acGUCGUGcUCCGGUCGCUCA---UGUUC- -5'
26480 5' -55.5 NC_005357.1 + 25090 0.72 0.282183
Target:  5'- cGCAGCGCGcccggcgccguGGGauaCAGCGGGUGCu-- -3'
miRNA:   3'- aCGUCGUGC-----------UCCg--GUCGCUCAUGuuc -5'
26480 5' -55.5 NC_005357.1 + 24562 0.7 0.345774
Target:  5'- cGCGGCgaugGCGAGGCCGGCcacGGU-CGGGc -3'
miRNA:   3'- aCGUCG----UGCUCCGGUCGc--UCAuGUUC- -5'
26480 5' -55.5 NC_005357.1 + 16573 0.69 0.428804
Target:  5'- uUGUAGCGCGAcGcGCCGGaCGAGgcCGAc -3'
miRNA:   3'- -ACGUCGUGCU-C-CGGUC-GCUCauGUUc -5'
26480 5' -55.5 NC_005357.1 + 11418 0.68 0.448795
Target:  5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3'
miRNA:   3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5'
26480 5' -55.5 NC_005357.1 + 11511 0.68 0.458982
Target:  5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3'
miRNA:   3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5'
26480 5' -55.5 NC_005357.1 + 24811 0.66 0.589091
Target:  5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3'
miRNA:   3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5'
26480 5' -55.5 NC_005357.1 + 29870 0.78 0.116259
Target:  5'- cGCAGCGCGAGGCCGGCaAGa----- -3'
miRNA:   3'- aCGUCGUGCUCCGGUCGcUCauguuc -5'
26480 5' -55.5 NC_005357.1 + 14675 0.75 0.168511
Target:  5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3'
miRNA:   3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.