Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 14590 | 0.67 | 0.511643 |
Target: 5'- aGCAGCgGCGcGGCCGGCGccaccGCGGGc -3' miRNA: 3'- aCGUCG-UGCuCCGGUCGCuca--UGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 38410 | 0.67 | 0.521395 |
Target: 5'- cGCGGCAUGAcgcugguGGCCGGCGcGUuuuGGg -3' miRNA: 3'- aCGUCGUGCU-------CCGGUCGCuCAuguUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 10064 | 0.67 | 0.53341 |
Target: 5'- gGCGGC-CGGGGCCucggcGGCGAccGCAGc -3' miRNA: 3'- aCGUCGuGCUCCGG-----UCGCUcaUGUUc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 12682 | 0.66 | 0.566641 |
Target: 5'- aGCAGC-CGAGGCCgaguucuacGGCGuGgcCGAu -3' miRNA: 3'- aCGUCGuGCUCCGG---------UCGCuCauGUUc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 12295 | 0.66 | 0.566641 |
Target: 5'- cGCGGUGC-AGGCCGGCGGcGUGu--- -3' miRNA: 3'- aCGUCGUGcUCCGGUCGCU-CAUguuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 26302 | 0.66 | 0.566641 |
Target: 5'- cGCAGUccuacguCGGGGCCAcCGAcGUGCAGc -3' miRNA: 3'- aCGUCGu------GCUCCGGUcGCU-CAUGUUc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 14934 | 0.69 | 0.438734 |
Target: 5'- gGCGGC-CGAGGCCGccggcauccucGCGuGGUGCGu- -3' miRNA: 3'- aCGUCGuGCUCCGGU-----------CGC-UCAUGUuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 4047 | 0.69 | 0.419007 |
Target: 5'- cGCGGCgaGCGgcAGGCCAGCGGcc-CAGGg -3' miRNA: 3'- aCGUCG--UGC--UCCGGUCGCUcauGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 28442 | 1.09 | 0.000543 |
Target: 5'- gUGCAGCACGAGGCCAGCGAGUACAAGa -3' miRNA: 3'- -ACGUCGUGCUCCGGUCGCUCAUGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 29870 | 0.78 | 0.116259 |
Target: 5'- cGCAGCGCGAGGCCGGCaAGa----- -3' miRNA: 3'- aCGUCGUGCUCCGGUCGcUCauguuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 14675 | 0.75 | 0.168511 |
Target: 5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3' miRNA: 3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 16156 | 0.73 | 0.234459 |
Target: 5'- cGCGauGCGCGAgccgaccaGGCCGGCGGGUGCc-- -3' miRNA: 3'- aCGU--CGUGCU--------CCGGUCGCUCAUGuuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 13874 | 0.72 | 0.27492 |
Target: 5'- cGCGcCGCGAuGGCCGGCGGccGCAAGg -3' miRNA: 3'- aCGUcGUGCU-CCGGUCGCUcaUGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 34051 | 0.71 | 0.297164 |
Target: 5'- aGcCAGCGCGAGGCCGGguuCGAGccggACAu- -3' miRNA: 3'- aC-GUCGUGCUCCGGUC---GCUCa---UGUuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 5749 | 0.71 | 0.312755 |
Target: 5'- -cCAGCGCGccGGgCAGCGAGUGCGc- -3' miRNA: 3'- acGUCGUGCu-CCgGUCGCUCAUGUuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 13502 | 0.71 | 0.32078 |
Target: 5'- gGCAGCgGCGAGGCCcuggcuuuGUGGG-ACGAGu -3' miRNA: 3'- aCGUCG-UGCUCCGGu-------CGCUCaUGUUC- -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 5307 | 0.7 | 0.35441 |
Target: 5'- gGCAGguCGAGGCCGuaggccGCGAGcACGu- -3' miRNA: 3'- aCGUCguGCUCCGGU------CGCUCaUGUuc -5' |
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26480 | 5' | -55.5 | NC_005357.1 | + | 24811 | 0.66 | 0.589091 |
Target: 5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3' miRNA: 3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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