Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 16310 | 0.67 | 0.555496 |
Target: 5'- cGC-GCACGGGa--AGCGAGUACGAc -3' miRNA: 3'- aCGuCGUGCUCcggUCGCUCAUGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 16573 | 0.69 | 0.428804 |
Target: 5'- uUGUAGCGCGAcGcGCCGGaCGAGgcCGAc -3' miRNA: 3'- -ACGUCGUGCU-C-CGGUC-GCUCauGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 24304 | 0.66 | 0.566641 |
Target: 5'- gGCGGU--GAGGUCGGCGAGcagccGCGGGu -3' miRNA: 3'- aCGUCGugCUCCGGUCGCUCa----UGUUC- -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 24562 | 0.7 | 0.345774 |
Target: 5'- cGCGGCgaugGCGAGGCCGGCcacGGU-CGGGc -3' miRNA: 3'- aCGUCG----UGCUCCGGUCGc--UCAuGUUC- -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 24811 | 0.66 | 0.589091 |
Target: 5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3' miRNA: 3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 25090 | 0.72 | 0.282183 |
Target: 5'- cGCAGCGCGcccggcgccguGGGauaCAGCGGGUGCu-- -3' miRNA: 3'- aCGUCGUGC-----------UCCg--GUCGCUCAUGuuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 26302 | 0.66 | 0.566641 |
Target: 5'- cGCAGUccuacguCGGGGCCAcCGAcGUGCAGc -3' miRNA: 3'- aCGUCGu------GCUCCGGUcGCU-CAUGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 28442 | 1.09 | 0.000543 |
Target: 5'- gUGCAGCACGAGGCCAGCGAGUACAAGa -3' miRNA: 3'- -ACGUCGUGCUCCGGUCGCUCAUGUUC- -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 29057 | 0.66 | 0.611694 |
Target: 5'- gGCGGCuCGuAGGCCAucaGCGGGU-CAu- -3' miRNA: 3'- aCGUCGuGC-UCCGGU---CGCUCAuGUuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 29870 | 0.78 | 0.116259 |
Target: 5'- cGCAGCGCGAGGCCGGCaAGa----- -3' miRNA: 3'- aCGUCGUGCUCCGGUCGcUCauguuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 31100 | 0.72 | 0.267807 |
Target: 5'- -uCGGUGC-AGGCCGGCGAGUgguGCGAGa -3' miRNA: 3'- acGUCGUGcUCCGGUCGCUCA---UGUUC- -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 31627 | 0.68 | 0.46929 |
Target: 5'- aGCcGCGcCGAGGCgCAGC-AGUACAu- -3' miRNA: 3'- aCGuCGU-GCUCCG-GUCGcUCAUGUuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 31902 | 0.67 | 0.500898 |
Target: 5'- gGCGGCggaaaGCGuGGCCGGCG-GUcaGCAGu -3' miRNA: 3'- aCGUCG-----UGCuCCGGUCGCuCA--UGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 33767 | 0.67 | 0.522483 |
Target: 5'- aGCAGC-CGcuGCacaCAGCGAGUACGGc -3' miRNA: 3'- aCGUCGuGCucCG---GUCGCUCAUGUUc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 34051 | 0.71 | 0.297164 |
Target: 5'- aGcCAGCGCGAGGCCGGguuCGAGccggACAu- -3' miRNA: 3'- aC-GUCGUGCUCCGGUC---GCUCa---UGUuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 38321 | 0.68 | 0.479716 |
Target: 5'- cUGCAGCGC-AGGCUGGCGGaaACAc- -3' miRNA: 3'- -ACGUCGUGcUCCGGUCGCUcaUGUuc -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 38410 | 0.67 | 0.521395 |
Target: 5'- cGCGGCAUGAcgcugguGGCCGGCGcGUuuuGGg -3' miRNA: 3'- aCGUCGUGCU-------CCGGUCGCuCAuguUC- -5' |
|||||||
26480 | 5' | -55.5 | NC_005357.1 | + | 39603 | 0.67 | 0.555496 |
Target: 5'- cGCuGCGCGuGGCC-GCGAGcACcuGg -3' miRNA: 3'- aCGuCGUGCuCCGGuCGCUCaUGuuC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home